Targeted therapies in development for non-small cell lung cancer

Thanyanan Reungwetwattana¹, Grace Kho Dy^2
1 Department of Internal Medicine, Division of Medical Oncology, Ramathibodi Hospital, Mahidol University, Bangkok 10400, Thailand; Department of Medicine, Roswell Park Cancer Institute, Buffalo, NY 14263, USA
² Department of Medicine, Roswell Park Cancer Institute, Buffalo, NY 14263, USA

Date of Submission	20-May-2013
Date of Acceptance	15-Sep-2013
Date of Web Publication	31-Dec-2013

Correspondence Address:
Grace Kho Dy
Department of Medicine, Roswell Park Cancer Institute, Buffalo, NY 14263, USA

Source of Support: None, Conflict of Interest: None

DOI: 10.4103/1477-3163.123972

 Abstract

The iterative discovery in various malignancies during the past decades that a number of aberrant tumorigenic processes and signal transduction pathways are mediated by “druggable” protein kinases has led to a revolutionary change in drug development. In non-small cell lung cancer (NSCLC), the ErbB family of receptors (e.g., EGFR [epidermal growth factor receptor], HER2 [human epidermal growth factor receptor 2]), RAS (rat sarcoma gene), BRAF (v-raf murine sarcoma viral oncogene homolog B1), MAPK (mitogen-activated protein kinase) c-MET (c-mesenchymal-epithelial transition), FGFR (fibroblast growth factor receptor), DDR2 (discoidin domain receptor 2), PIK3CA (phosphatidylinositol-4,5-bisphosphate3-kinase, catalytic subunit alpha)), PTEN (phosphatase and tensin homolog), AKT (protein kinase B), ALK (anaplastic lym phoma kinase), RET (rearranged during transfection), ROS1 (reactive oxygen species 1) and EPH (erythropoietin-producing hepatoma) are key targets of various agents currently in clinical development. These oncogenic targets exert their selective growth advantage through various intercommunicating pathways, such as through RAS/RAF/MEK, phosphoinositide 3-kinase/AKT/mammalian target of rapamycin and SRC-signal transduction and transcription signaling. The recent clinical studies, EGFR tyrosine kinase inhibitors and crizotinib were considered as strongly effective targeted therapies in metastatic NSCLC. Currently, five molecular targeted agents were approved for treatment of advanced NSCLC: Gefitinib, erlotinib and afatinib for positive EGFR mutation, crizotinib for positive echinoderm microtubule-associated protein-like 4 (EML4)-ALK translocation and bevacizumab. Moreover, oncogenic mutant proteins are subject to regulation by protein trafficking pathways, specifically through the heat shock protein 90 system. Drug combinations affecting various nodes in these signaling and intracellular processes are predicted and demonstrated to be synergistic and advantageous in overcoming treatment resistance compared with monotherapy approaches. Understanding the role of the tumor microenvironment in the development and maintenance of the malignant phenotype provided additional therapeutic approaches as well. More recently, improved knowledge on tumor immunology has set the stage for promising immunotherapies in NSCLC. This review will focus on the rationale for the development of targeted therapies in NSCLC and the various strategies employed in preventing or overcoming the inevitable occurrence of treatment resistance.

Keywords: Drug resistance, heat shock protein 90 inhibitors, non-small cell lung cancer, programmed cell death-1 receptor inhibitors, protein kinase inhibitors

How to cite this article:
Reungwetwattana T, Dy GK. Targeted therapies in development for non-small cell lung cancer. J Carcinog 2013;12:22

How to cite this URL:
Reungwetwattana T, Dy GK. Targeted therapies in development for non-small cell lung cancer. J Carcinog [serial online] 2013 [cited 2021 Oct 13];12:22. Available from: https://carcinogenesis.com/text.asp?2013/12/1/22/123972

Introduction
Lung cancer is the leading cause of cancer-related mortality in the United States and world-wide. The 2013 estimated new cases and deaths in the United States are 228,190 and 159,480 cases, respectively. ^[1] The 5-year survival rate is 5-10% for locally advanced/advanced stage non-small cell lung cancer (NSCLC) patients and it has remained essentially unchanged over the past decades before the advent of the targeted therapy era. ^[2] Despite the generally poor long-term outcomes of advanced stage disease, prolonged survival can be seen in some groups of patients. This is because NSCLC is a heterogeneous disease – its natural history is unique in every patient as tumor-related heterogeneity in terms of histological and molecular features affect treatment outcomes. ^[3] Both targeted and comprehensive genome-wide studies have demonstrated various recurrent genetic and epigenetic changes in lung cancer that confer oncogenic properties, many of which have differential frequencies according to histologic subtype. ^{[4],[5],[6],[7],[8],[9],[10]} Indeed, the changing landscape of lung cancer therapy was heralded by the discovery that the presence of activating kinase domain mutations in the epidermal growth factor receptor (EGFR) can identify a subset of patients who can greatly benefit from EGFR tyrosine kinase inhibitors (TKIs). This, along with the breakthroughs in imaging and genetic sequencing technologies, ushered in the era of precision medicine. The pertinent oncogenic pathways in lung cancer are summarized in [Figure 1]. This article delineates the rationale for the development of various targeted agents in NSCLC. [Table 1] provides a brief summary comparing the genotypic differences by histologic subtype. Clinical issues of safety and toxicity will be described briefly where pertinent as this topic has recently been reviewed in greater detail elsewhere. ^[11]

Figure 1: Cell signaling pathways in lung cancer. Depicted are the cellular signaling pathways involved in the proliferation, differentiation, growth, metastasis, resistance to apoptosis and angiogenesis in neoplasms, highlighting the targets amenable to therapeutic interventions in lung cancer therapy. Membrane-bound members of the ErbB family of receptors, MET, VEGFR and IGF-1R mediate mitogenic signals from extracellular ligands, such as EGF, HGF, VEGF and IGF, respectively. The Ras/Raf/MEK/ERK (mitogen-activated protein kinase, MAPK) and PI3K/AKT/mTOR pathways are major intracellular axes that regulate intracellular signaling traffic (AKT: Protein kinase B, AMPK-1: 5′-AMP-activated protein kinase catalytic subunit alpha-1, EGF: Epidermal growth factor, EGFR: Epidermal growth factor receptor, eIF-4F: Eukaryotic initiation factor-4 complex, EML4-ALK: Echinoderm microtubule-associated protein-like 4 fused with the anaplastic lymphoma kinase, ERK: Extracellular signal-regulated kinases, 4E-BP1: 4E binding protein-1, GAP: GTPase; activating protein, GDP: Guanosine diphosphate, GEF: Guanine nucleotide exchange factors, GRB2: Growth factor receptor-bound protein 2, GTP: Guanosine triphosphate, HER: Human epidermal growth factor receptors, HGF: Hepatocyte growth factor, IGF: Insulin growth factors, IGF-1R: Insulin-like growth factor 1 receptor, IRS: Insulin receptor substrate, MEK: Mitogen-activated protein kinase, mTOR: Mammalian target of rapamycin, PDK1: 3-phosphoinositide – dependent protein kinase 1, PI3K: Phosphatidylinositide 3-kinase, PTEN: Phosphatase and tensin homolog, rpS6: Ribosomal protein S6, S6K1: 40S ribosomal protein S6 kinase, SHC: Src homology/collagen, SOS: Son of sevenless, TSC: Tuberous sclerosis; VEGFR: Vascular endothelial growth factor receptor) Click here to view

Table 1: Molecular alterations in NSCLC Click here to view

Signaling Receptors

ErbB family of receptors

EGFR (also termed human epidermal growth factor receptor 1 [HER1] or ErbB 1) is a member of the ErbB family (consisting of 4 members: EGFR, HER2, HER3 and HER4) of cell surface receptor tyrosine kinase (RTK). ^[44] It is a 170-kDa RTK with an extracellular ligand-binding domain, a transmembrane region and an intracellular tyrosine kinase. The RTKs form homodimers and heterodimers after binding to specific ligands (except the orphan receptor HER2, which does not interact with any ligand directly), leading to autophosphorylation of tyrosine residues on the intracellular TK domain. ^[45] This interaction recruits a diverse set of signal transduction cascades including the phosphoinositide 3-kinase (PI3K)/protein kinase B (AKT)/mammalian target of rapamycin (mTOR), signal transduction and transcription (STAT) transcription and RAS/RAF/mitogen-activated protein kinase (MAPK) proliferation pathway [Figure 1]. ^[44] In 2004, somatic mutations in the TK domain of EGFR, found most frequently in adenocarcinomas from patients in Asia who were never or former smokers, were strongly correlated with sensitivity to EGFR TKIs. ^[ 46] These mutations are mostly distributed in four exons (exon 18 to exon 21). ^[15],[46] In-frame deletions of exon 19 (44%; E746-A750 deletion) and L858R substitutions in exon 21 (41%) are the most prevalent mutations associated with sensitivity to EGFR TKIs. The point mutations in exon 18 (G719C, G719S and G719A) and exon 20 (V765A and T783A) are less frequent; 5 and 1%, respectively. ^[16] More recently, an 18-bp insertion in exon 19, comprising about 1% of all EGFR mutations, has been reported to be correlated with sensitivity to EGFR TKIs. ^[47] Presence of the “classical” mutations in exons 18, 19 and 21 are the best predictive biomarker for the efficacy of EGFR TKIs such as erlotinib and gefitinib, with superior response rate (RR) and progression-free survival (PFS) compared with conventional chemotherapy or best supportive therapy in patients with tumors harboring EGFR TKI-sensitive mutations. ^[48] Until date, the EGFR TKI erlotinib (gefitinib is another TKI approved in other countries) is approved for first-line, second-or third-line and maintenance monotherapy for NSCLC based on highlighted Phase III trials in [Table 2]. ^{[48],[49],[50],[51],[52],[53],[54],[55],[56],[57],[58],[59],[60],[61],[62],[63]} Recently, the Food and Drug Administration (FDA) approved afatinib (Gilotrif) for the first-line treatment of patients with metastatic NSCLC whose tumors have EGFR exon 19 deletions or exon 21 (L858R) substitution mutations based on the demonstration of improved PFS in a multi-center, international, open-label, Phase III trial [Table 2]. ^[44] In comparison, cetuximab (Erbitux), an immunoglobulin G chimeric monoclonal antibody (mAb) against EGFR, which competitively inhibits ligand binding, had only been investigated in combination with chemotherapy in Phase III trials of molecularly unselected NSCLC [Table 2]. ^[61] Fluorescent in-situ hybridization (FISH) assay to determine EGFR copy number and gene amplification had demonstrated potential promise as a predictive marker of response to cetuximab in a small study ^[65] and is thus being evaluated as a predictive biomarker of cetuximab in the ongoing Phase III study S0819 (NCT00946712). However, no biomarker has been found to consistently correlate with the benefit from cetuximab in the concluded Phase III clinical studies for NSCLC, including EGFR FISH or KRAS (Kirsten-rous avian sarcoma) mutation status, which is in contrast with experience in metastatic colon cancer. ^[66] Other mAbs against EGFR under investigation in trials for NSCLC include necitumumab, panitumumab, nimotuzumab, matuzumab and zalutumumab [Table 3].

Table 2: Summary of highlighted Phase III trials of EGFR inhibitors in advanced NSCLC Click here to view

Table 3: Highlighted ongoing Phase I, II and III studies in NSCLC for novel ErbB inhibitors Click here to view

Despite the dramatic responses to EGFR TKIs, most of the patients develop disease progression within one 1 year, usually because of secondary or acquired resistance. ^[67] Treatment resistance, whether primary/de novo or secondary/acquired, is generally mediated by mechanisms that enable the persistence of aberrant mitogen-activated protein kinase (MAPK) pathway activation, such as the presence of T790M mutation (constituting 50-60% of acquired resistance) in exon 20 ^[68] or most EGFR exon 20 insertions, which reduce binding affinity to the first-generation TKIs, amplification of HER2 or MEK1 amplifications, activating mutations in RAS or BRAF. ^{[69],[70],[71]} MAPK-independent pathways on the other hand involve either acquired phosphoinositide-3-kinase, catalytic, alpha polypeptide (PIK3CA) mutations, ^[71] amplification of mesenchymal-epithelial transition (MET) proto-oncogene, which provides a bypass avenue through transactivation of HER3/PI3K signaling, ^[24],[72] or by impairment of cell death mechanisms as seen with certain germline polymorphic variants of the proapoptotic molecule pro-apoptotic BCL-2-interacting mediator (BIM) (pro-apoptotic Bcl-2 family member). ^[73] Other documented phenomena to explain treatment resistance are epithelial-to-mesenchymal transition mediated by either AXL kinase activation or activation of transforming growth factor-β pathway through downregulation of MED12^{[74],[75],[76]} as well as phenotypic transformation to small cell histology. ^[22]

De novo mutations in HER2 occur in 2-4% of NSCLC, up to approximately 10% in adenocarcinomas. ^[23],[77] Majority (>95%) of these represent small insertions in exon 20, largely (>80%) represented by a 12 basepair in-frame insertion causing a duplication of the amino acids YVMA that results in constitutive activation of HER2. ^[78],[79] These mutations appear to occur predominantly in women and never smokers and frequently are associated with either HER2 or EGFR copy number gains or gene amplifications in a Chinese lung adenocarcinoma cohort, ^[80] though there was no such gender association reported by the North American cohort. Concurrent HER2 alterations by FISH also occurred at a much lower frequency in the North American group. ^[78] In general, HER2 mutations are mutually exclusive with EGFR mutations ^[80] though co-existence of both EGFR and HER2 mutations simultaneously had been described in the literature. ^[25] In contrast to HER2 mutations, HER2 gene amplification or copy number gains as assessed by FISH had been reported in up to 23% of NSCLC cases in Western Hemisphere. ^[26],[81] Based on cumulative experience to date, it is anticipated that durable clinical benefit with ErbB-targeted therapies in NSCLC will most likely be best predicted by the presence of relevant activating mutations compared with mere presence of gene amplification or copy number changes.

Second-and third-generation EGFR TKIs are developed as part of the strategy to overcome treatment resistance to first-generation EGFR TKIs. Second-generation agents include the irreversible inhibitors of the ErbB family of receptors: Afatinib (also known as BIBW 2992, which targets EGFR, HER2, HER4), dacomitinib (also known as PF0299804, which targets EGFR, HER2, HER4) and neratinib (also known as HKI272, which targets EGFR and HER2). These agents have been or are being evaluated in NSCLC-specific clinical trials [Table 3]. Afatinib and dacomitinib, which are the furthest in clinical development, have demonstrated superior PFS compared with either chemotherapy or erlotinib, but no differences in overall survival (OS) in the reported randomized Phase II/III studies to date. ^{[64],[82],[83],[84]} Further development of neratinib in NSCLC is unlikely given its low clinical activity due to dosing limitations arising from diarrhea-related toxicities. ^[85] Pelitinib (EKB-569) and canertinib (CI-1033) have also been discontinued from further clinical development. Based on the clinical data of achievable plasma concentrations of continuous daily dosing of neratinib, dacomitinib and afatinib, it is thought that primary resistance to these agents will still be encountered for the EGFR T790M mutation as well as exon 20 insertions ^[86] and clinical trial results thus far with the second-generation EGFR TKIs had generally supported this prediction with few exceptions (see below). Thus, an alternate schedule of drug administration, such as intermittent or pulse high-dose therapy using afatinib to determine its activity against T790M (NCT01647711), is under investigation. Intermittent high-dose schedule to attain higher central nervous system (CNS) penetration has demonstrated some efficacy in treating disease progression confined to the CNS wherein, the pathophysiology is different from acquired resistance in extracranial sites of malignancy. ^[87]

Clinical antitumor responses to EGFR TKIs in cases with EGFR exon 20 insertion, such as A763_Y764insFQEA, have been reported. ^{[88],[89],[90]} The observed variability of response to EGFR TKIs with EGFR exon 20 insertions is thought to be related to functional differences arising from the heterogeneity in the location of the insertion, whereby insertions in the more distal region from 773 to 775 would be predicted to have the most significant drug-binding effect compared with insertions involving amino acids more proximally at 764-770. ^[88] Exon 20 mutations in HER2 in contrast tend to be more homogeneous and located in the most proximal region between codons 775 and 881. ^[78] Clinical responses to HER2-targeted antibody and second-generation EGFR TKI therapies (specifically afatinib) have been documented for NSCLC with HER2 mutations. ^{[25],[91],[92]}

Third-generation EGFR inhibitors designed to inhibit the EGFR T790M mutant include WZ4002, CO-1686 and AZD9291. ^[93],[94] Poziotinib (also known as HM781-36B), a new potent irreversible inhibitor of EGFR, HER2, HER4 and TEC family of kinases inhibitor (BTK, BLK and BMX) demonstrated preclinical efficacy against T790M mutant at 8-fold lower doses compared to afatinib. ^[95] Early phase clinical trials of poziotinib and CO-1686 are still ongoing but data from preclinical modeling suggest that acquired resistance to these next-generation TKIs emerge by increased extracellular signal-regulated kinases (ERK) activation, such as through amplification of MEK1 or down regulation of negative regulators of ERK signaling, which may in turn be overcome by the use of MEK inhibitors. ^[69] Akin to the clinically successful combinatorial strategy of BRAF and MEK inhibition used in BRAF-mutant melanoma, the combination of WZ4002 and a MEK inhibitor appears to be preclinically effective in treating drug-resistant tumors as well as in delaying the emergence of tertiary drug-resistant clones. Another new agent, which started its first-in-man Phase I clinical testing in early 2013 is AZD9291, which is being developed for patients with acquired resistance to EGFR TKI, including T790M. The multitargeted EGFR/HER2/vascular endothelial growth factor receptor/EphB4 inhibitor XL547 and the dual reversible anaplastic lymphoma kinase (ALK)/EGFR inhibitor AP26113 also demonstrated preclinical activity against EGFR T790M mutant tumors. ^[96],[97] However, in the Phase II study of XL647 (KD019) in patients with acquired resistance to EGFR TKI, only 3% observed response rate (ORR) was observed, with disease progression as the best tumor response seen in 67% of the cases with documented T790M. ^[98] Early phase data of AP26113 suggested a preliminary hint of clinical activity, though relatively modest, in patients with resistance to other EGFR TKIs. ^[99]

A different approach in addressing EGFR TKI resistance involves the use of combination regimens. Therefore, the combination of erlotinib with cetuximab. ^[100] and the combination of erlotinib with MM-121, a fully human mAb that targets HER3, in patients with acquired resistance to EGFR TKI did not show sufficient clinical activity for further investigation in this population, ^[101] the combination of afatinib and cetuximab was the first to report very promising overall RR of 36%, including ORR of 29% in the T790M cases. ^[102] Other combination regimens, such as with c-MET inhibitors, heat shock protein 90 (HSP90), PI3K/mTOR inhibitors will be discussed subsequently under each respective pathway.

ALK and leukocyte tyrosine kinase receptors

The echinoderm microtubule-associated protein-like 4 (EML4)-ALK fusion gene (EML4 fused with the ALK) is one of the newer molecular targets elucidated in NSCLC. The ALK is a member of the insulin superfamily of RTKs normally expressed only in the CNS, small intestine and testis. ^[103] The ALK translocation (t[2;5][p23;q35]) was originally found in a subset of anaplastic large cell lymphomas in 1994. ^[104] The translocation of 2 genes in the short arm of chromosome 2, between the C-terminal kinase domain of ALK and the N-terminal portion of the EML4, was discovered in a NSCLC patient in Japan in 2007. ^[105] This translocation causes aberrant activation of downstream oncogenic signaling pathways such as the RAS/RAF/MEK, PI3K/AKT/mTOR and the Janus kinase (JAK)/STAT signaling pathway, leading to cell proliferation, invasion and inhibition of apoptosis [Figure 1]. ^[17] EML4-ALK translocation is found in 3-6% of all cases of NSCLC. ^[18],[106] It is more frequent in younger patients, men and never-smokers/light smokers with NSCLC. ^[18],[106] EML4-ALK translocation is mutually exclusive with EGFR or KRAS mutations in the ALK inhibitor-naïve population. ^[106] There are several EML4-ALK translocation variants in lung cancer, in addition to other ALK fusion partners (e.g., kinesin family member 5B [KIF5B], KLC, TFG). ^[107] Crizotinib (PF-02341066), an oral dual ALK/MET inhibitor, is currently the only FDA-approved agent for advanced ALK-positive NSCLC. This was based on the high ORR of approximately 60% seen in early phase studies which recruited a heavily pre-treated population, wherein treatment response to conventional cytotoxic chemotherapy is otherwise generally < 10% in this setting. ^[108] More recent data from ongoing Phase III studies confirm superior PFS in patients who received crizotinib as second-line therapy compared with chemotherapy (hazard ratio [HR] 0.49, P < 0.0001). ^[109] The gold standard assay for detection of EML4-ALK is FISH. Other assays in evaluation involve real-time polymerase chain reaction, next-generation sequencing and immunohistochemical approaches. ^[110] Each diagnostic platform has advantages and disadvantages and standardization efforts are currently ongoing. Recently, Yi et al. proposed to test ALK positivity by a combination of immunohistochemical and FISH techniques in NSCLC, similar to algorithmic HER-2 testing in breast cancer. ^[111] This method might be a cost-effective and accurate screening modality, but further validation is warranted.

Despite the remarkable initial responses, acquired resistance to crizotinib develops within a year. ^[112] Various mechanisms of acquired resistance have been documented, several of which may co-exist simultaneously. Multiple secondary mutations have already been identified in patients treated with crizotinib. ^[112],[113] Homologous to the gatekeeper EGFR T790M mutation is the L1196M substitution which, unlike EGFR T790M, does not appear to confer a growth disadvantage to cells. ^[113] Other secondary mutations such as G1269A, C1156Y, L1152R and 1151Tins may affect affinity of the mutant ALK for either adenosine triphosphate (ATP) or drug and these differences have ramifications on the development of next-generation ALK inhibitors, which have varied mutation-specific efficacy amongst different agents. Other resistance mechanisms implicated include amplification of ALK gene, aberrant activation of other kinases such as amplification of KIT or direct MAPK pathway activation as represented by either KRAS mutation, upregulation of EGFR or detection of an activating EGFR mutation not seen in the initial tumor tissue. ^{[113],[114],[115],[116],[117]} Another potential approach that maybe effective is dual inhibition of PI3K and MEK pathway, which demonstrated significant activity in an ALK-translocated NSCLC cell line. ^[118]

Several second-generation agents against crizotinib-resistant EML4-ALK-positive cancers are being developed. HSP90 inhibitors also show preclinical and clinical activity in ALK-rearranged NSCLC and may have broader activity across different ALK mutations. ^{[114],[119],[120],[121]} The reversible dual ALK/EGFR inhibitor AP26113 is a more potent ALK inhibitor than crizotinib and demonstrates preclinical activity against various secondary mutations resistant to crizotinib, including L1196 and G1269A. ^[122] In an ongoing Phase I dose-escalation study, it demonstrated activity in up to two-thirds of crizotinib-resistant ALK-positive patients. LDK378 is a selective ALK inhibitor with weak c-MET activity which showed substantial clinical activity, with an ORR of 81% at doses > 400 mg in ALK-positive NSCLC patients previously treated with crizotinib. ^[123] Both agents demonstrated tumor responses against crizotinib-resistant brain metastases.

LTK is a RTK, which shares a high degree of homology (nearly 80% identical) with ALK and is expressed in hematopoietic cells, brain and placenta. ^[104],[124] Though its function is not well- understood, it is thought to promote growth and survival through activation of RAS/MAPK and PI3K/AKT signaling pathways. ^[125] Mutations in LTK at residues F568 and R669, which correspond to the activating mutations F1174 L and R1275Q in ALK, demonstrated transforming potential, with anchorage-independent growth of the mutant-expressing cells inhibited by crizotinib or a pan-JAK inhibitor. Recurrent somatically acquired LTK mutations, including the R669 variant, have been described in approximately 1.5% of NSCLC. ^[126] Although there are no clinical outcomes data yet, it is anticipated that these mutations may potentially be responsive to ALK inhibitors.

Erythropoietin-producing hepatoma family of receptors

The EPH receptor family of EphA and EphB receptors generates an unusual bidirectional signaling whereby kinase-induced forward signaling occurs in the receptor-expressing cell, whereas reverse signaling through the Src family kinases occurs in the membrane-bound ephrin ligand-expressing cell. ^[127] This bidirectional signaling, as well as the balance of signaling through its catalytically deficient forms (e.g., EphB6), accounts for the context-dependent oncogenic or tumor-suppressor functions described. ^[128] Mutations in almost all of the Eph receptors have been reported in NSCLC, most frequently for EphA5, EphA3, EphB1, EphA7 and EphB6, ranging between 2% and 5% in lung adenocarcinomas. ^[6] Of note, these mutations are not mutually exclusive with each other, e.g., 58% of samples with EphA3 mutation also have at least another Eph receptor mutation. ^[129] Although wild-type EphA2 kinase activity is independent of ligand-binding, binding to its ligand ephrinA1 negatively regulates growth and migration ^[130] and thus agonistic antibodies have been developed to stimulate tumor suppressor activity. Whether this strategy can overcome the oncogenic effect of the recurrent somatic G391R mutation in the first fibronectin Type III domain of EphA2 reported in 7% of squamous cell lung carcinomas (SQCLC) is unknown. This mutation promotes cell survival and metastasis through activation of p130 ^Cas which appears to be responsive to mTOR inhibition. ^[19] In comparison, several kinase domain mutations in EPHA3 result in diminished phosphorylation of the EPHA3 receptor, which functionally attenuates the tumor-suppressive effects of wild-type EPHA3 through regulation of AKT activity. ^[131] Various multikinase inhibitors currently in clinical use potently target Eph receptors, such as dasatinib and nilotinib. XL647 (also known as PRIM-001, KD019), a reversible ATP-competitive inhibitor of various kinases (EGFR, VEGFR2, FLT4, c-kit) in the nanomolar range including EphB4, is currently being compared in a Phase III study to erlotinib in NSCLC as second-or third-line therapy. As the Eph/ephrin system is poorly understood and drugs are in early development, there are currently no genotypically-defined clinical studies specific for this pathway.

Insulin-like growth factor receptor

The IGF-1R is an emerging target for cancer treatment because it is overexpressed in many cancers, including NSCLC. IGF-1R is activated by the binding of IGF ligands, IGF-1 or IGF-2, to the extracellular domain of IGF-1R. ^[132] IGF-1R signaling involves the activation of various intracellular signaling pathways as shown in [Figure 1]. ^[133] A predictive biomarker of response to IGF-1R has not been established yet. Despite highly promising Phase II trial data in NSCLC for figitumumab, a human mAb against IGF-1R, the lack of OS benefit and concern for increased toxicities, including treatment-related fatalities, in the two Phase III studies (first-line in combination with chemotherapy; combination with erlotinib in previously treated patients) dampened the enthusiasm for the development of this class of drugs for lung cancer. ^[134],[135] The Phase I/II study of erlotinib in combination with a different mAb, cixutumumab, was also not developed further clinically as the combination was toxic and efficacy was low in unselected patients. ^[136] Two randomized Phase II studies incorporating cixutumumab in combination with first-line chemotherapy for patients with non-squamous NSCLC are ongoing (NCT00955305, NCT01263782).

Unfortunately, small-molecule IGF-1R TKIs faced obstacles in their clinical development due to the experience encountered with the mAbs as briefly described above. Owing to the significant homology between IGF-1R and insulin receptor (InsR) TK domains, these drugs generally inhibit both IGF-1R and InsR signaling and are associated with on-target metabolic derangements. Although this may be viewed as a disadvantage, hyperglycemia from IGF-1R TKIs is not life-threatening and is clinically manageable. ^[133] Moreover, inhibition of the InsR signaling may in fact prevent the bypass effect of drug-induced hyperinsulinemia and overcome the increased sensitivity to the growth stimulatory effects of insulin induced by IGF-1R blockade, which is thought to underlie the failure of IGF-1R mAbs in the clinical trials aforementioned. ^[137] This is a similar rationale for combining IGF-1R mAb with inhibitors of mTOR, which is downstream of insulin signaling, as supported by preclinical models showing that resistance to IGF-1R therapy arises through induced activation of AKT and mTOR. ^[138] A Phase I study of linsitinib (a dual TKI of IGF-1R and InsR) in combination with erlotinib demonstrated that 2 out of 4 partial responses (PR) were in patients who had NSCLC. ^[139] This combination is being evaluated in ongoing Phase II trials [Table 4]. AXL1717 (Axelar AB) is a TKI of the IGF-1R that does not inhibit the closely related InsR. A Phase I study of AXL1717 showed 4 out of 6 patients with SQCLC who had an objective response with tumor necrosis on positron emission tomography scan and prolonged disease control. ^[20] A randomized Phase II study comparing it to docetaxel as second or third-line therapy in NSCLC is ongoing (NCT01561456).

Table 4: Highlighted ongoing clinical studies of select novel targeted therapies in advanced NSCLC Click here to view

Fibroblast growth factor receptor

At the turn of the new millennium, identification of therapeutic targets for SQCLC had lagged behind adenocarcinoma of the lung. This impasse was first surmounted by genomic analyses showing the presence of focal fibroblast growth factor receptor FGFR1 amplification sensitive to treatment with small molecule FGFR TKIs in approximately 20% of SQCLC. ^[140] FGFR1 is a member of FGFR family of 4 highly conserved RTKs whose activation leads to downstream signaling through PI3K/AKT and RAS/RAF/MEK/MAPK pathways [Figure 1]. ^[141] Mutations are seen across the four FGFR members, but individually occur less frequently. More recently, FGFR gene fusions were also described in NSCLC, namely BAG4-FGFR1, FGFR2-CIT, FGFR2-KIAA1967 and FGFR3-TACC3. ^[ 21] These fusion products can exhibit oligomerization capability, resulting in FGFR TK activation sensitive to FGFR TKIs. ^[21] FGFR3-TACC3 fusion was the most frequently reported to date, found in approximately 1.8% of SQCLC screened. ^[142] Owing to the high degree of homology between VEGFR2, PDGFR (platelet-derived growth factor receptor) and FGFR TK domain, various oral multikinase inhibitors currently in clinical use or early phase development demonstrate ability to inhibit FGFR1 in nanomolar concentrations (e.g. nintedanib, brivanib, dovitinib, sorafenib, pazopanib, ponatinib, etc.). Ponatinib has pan-FGFR activity and is thus being explored in a Phase II/III for advanced SQCLC with FGFR kinase alterations (NCT01761747). Dovitinib is also being evaluated in a modular Phase II study in tumors with activated pathways that maybe inhibited by dovitinib, such as mutations or translocations of FGFR, PDGFR, VEGF, cKIT, FLT3, CSFR1, tropomyosin-related kinase (Trk) and rearranged during transfection (RET) (NCT01831726). More selective FGFR inhibitors in early phase clinical testing include JNJ-42756493, BGJ398 and AZD4547. An Eastern Cooperative Oncology Group randomized Phase II study of docetaxel with or without AZD4547 in patients with FGFR1-amplified SQCLC is being planned (NCT01824901).

Similar to other TKIs, an anticipated mechanism of acquired resistance to FGFR inhibitors, particularly with FGFR-selective inhibitors, is the emergence of a secondary gatekeeper mutation, which has been modeled recently as the V555M alteration in FGFR3. ^[143] Co-existence of other activated signaling pathways, like MAPK pathway, may also underlie intrinsic resistance to FGFR1 inhibition. ^[143],[144] Conversely, activated FGFR pathway can mediate resistance to other targeted therapies such as EGFR, HER, MET, BRAF and angiogenesis inhibitors. ^{[145],[146],[147],[148],[149]} This provides rationale for combination therapy, which is anticipated to result in improved efficacy and in delayed emergence of treatment resistance. Combination trials are either underway (NCT01820364) or in early stages of planning.

Discoidin domain receptor 2

DDR2 (located on 1q23) is a RTK, which binds collagen and has been shown to promote cell migration, proliferation and survival. ^[43] Conventional Sanger sequencing performed in a discovery-validation study of 290 SQCLC tumors identified the presence of DDR2 gene mutations in 3.2% of primary squamous cell carcinoma (SCC) tumor samples. ^[5] No alterations in DDR2 gene copy number or protein expression was found. Functional characterization revealed that these mutations are oncogenic and that DDR2-driven transformation is sensitive to treatment by dasatinib, an oral multikinase inhibitor dual-specific Src and Abl kinase. Other FDA-approved kinase inhibitors with DDR2-inhibitor activity include imatinib, nilotinib, ponatinib, sorafenib and pazopanib. Several studies of dasatinib in NSCLC were terminated due to either slow accrual or toxicity concerns. A Phase II trial with dasatinib in previously treated patients with advanced NSCLC regardless of molecular profile is ongoing (NCT00787267). Another Phase II study recruiting SQCLC patients with DDR2 mutation is evaluating dasatinib as first-or subsequent-line therapy in this patient population (NCT01514864).

PDGFRα and KIT

Recurrent amplification of chromosomal segment 4q12 was identified in 3-7% of lung adenocarcinomas and 8-10% of SQCLC. ^[34] Preclinical models in NSCLC cell lines with focal high level-amplitude gains in this chromosomal segment implicate the potential oncogenic role of PDGFRα and KIT. However, amplification alone is not sufficient to predict treatment sensitivity to specific kinase inhibitors as only one out of six cell lines with 4q12 amplification were found to be sensitive to treatment with imatinib or sunitinib, multikinase inhibitors which include KIT and PDGFRα in their spectrum of drug targets. ^[34] Various nonsynonymous mutations in PDGFRα and KIT are reported in approximately 4-2% of NSCLC, respectively. ^[150] There is an ongoing Phase II study in NSCLC, SCLC and thymic malignancies that allocate several targeted therapies according to the tumor’s molecular profile (NCT01306045). Patients with PDGFRα mutation or gene amplification or KIT mutation are assigned treatment using sunitinib in this study. It is anticipated that this enrichment strategy will yield better tumor RRs and corresponding clinical benefit compared to the more modest result of approximately 2-10% RR seen in older NSCLC trials in the molecularly unselected population. ^[151],[152]
Signaling Pathways

RAS/RAF/MEK/ERK pathway

The RAS family of proteins are oncogenes discovered in animals through a cancer-causing retrovirus and encoded by 3 genes; H-RAS, K-RAS and N-RAS. All 3 of these genes are commonly mutated in human cancers, leading to constitutively activated proteins locked in the guanosine triphosphate (GTP)-bound “on” state. RAS genes encode G proteins downstream of RTKs such as EGFR [Figure 1]. ^[153] Activated RAS/RAF/MEK/ERK pathway regulates cell growth, differentiation and apoptosis by interacting with multiple effectors. ^[27] In 15-25% of patients with NSCLC, KRAS mutations are present and 97% of KRAS mutant cases are exon 2 (codons 12 or 13) mutations. ^[154] In contrast to EGFR mutations, KRAS mutations are found in 20-30% of white patients but in only 5% of East Asian patients with lung adenocarcinomas. ^[27] KRAS mutations are predominantly found in adenocarcinomas of smokers and in general are mutually exclusive with EGFR and HER2 mutations. Testing for the presence of KRAS mutations as a predictive biomarker of response to chemotherapy or EGFR therapies in NSCLC is controversial and to date does not preclude the use of EGFR TKI though the clinical benefit is likely to be marginal compared with patients with wild-type KRAS NSCLC. ^[155]

NRAS mutations, in comparison, are present in <1% of lung cancers, primarily in adenocarcinomas. ^[13] A distinct subset of tumors with inactivating mutations in the tumor suppressor gene NF1, which manifest the hyperactivated RAS phenotype in the absence of mutations in RAS itself, is found in approximately 7% of lung adenocarcinomas. ^[6] NF1 encodes neurofibromin 1, a GTPase-activating protein that negatively regulates RAS signaling.

Mutations in BRAF, a member of the RAF family of serine/threonine kinases, have been reported in 1-4.9% of NSCLC, predominantly in adenocarcinomas. ^[14] The V600E mutation is the most common found in NSCLC (56.8%) and is associated with micropapillary features, female gender and poor OS. Unlike EGFR and HER2 mutations, BRAF mutations tend to be found commonly among smokers. ^[156] Furthermore, unlike EGFR and HER2 mutations, several non-V600 BRAF mutations found in NSCLC are inactivating (e.g., D594G, G466V, Y472). ^{[29],[156],[157]} Even though, downstream MEK and ERK activation are, comparatively much less compared with BRAF V600E mutants, these phosphorylation events are paradoxically still at or above those observed with wild-type in BRAF kinase-impaired/kinase-inactivating mutants, presumably due to transactivation of CRAF. ^[157],[158] Interestingly, kinase-impaired BRAF mutations in NSCLC appear to be sensitive to dasatinib, providing rationale for an ongoing Phase II study in NSCLC patients with inactivating BRAF mutations (NCT01514864). ^[157] Finally, somatic activating mutation in exon 2 of MEK1, a dual-specificity serine/threonine and tyrosine kinase, is seen in approximately 1% of lung adenocarcinomas. ^[159]

Because the development of RAS inhibitors have been largely unsuccessful to date (e.g., farnesyltransferase inhibitors), various investigations thus have focused on the modulation of downstream proteins or protein trafficking pathways. ^[160] Preclinical models have shown that MEK inhibitors can induce significant tumor regressions in KRAS – or BRAF-induced lung tumors. ^{[161],[162],[163]} Splice site mutations that lead to higher expression of the active RAC1b isoform, a G-protein that promotes KRAS-induced lung tumorigenesis, ^[164] may be potentially associated with sensitivity to MEK inhibition. ^[165] However, the kinase-impaired D594G or G469E BRAF mutations are known to be highly resistant to MEK inhibitors in melanoma cell lines. ^[29] In addition, resistance to MEK inhibition is thought to arise potentially through emergence of secondary mutations in MEK, ^[166],[167] either in conjunction with or independently of the emergence of KRAS or BRAF amplification in cells harboring KRAS mutation or BRAF V600E mutation, respectively. Co-inhibition of BRAF may overcome resistance to MEK inhibition alone in the BRAF-mutant cases, thus providing rationale for combination regimens in this particular setting. ^[168],[169] Regardless of the mechanism involved, ERK inhibition can block proliferation of MEK inhibitor-resistant tumors. In addition, dual MEK-ERK inhibition shows additive/synergistic effect and can delay emergence of and potentially overcome, acquired MEK inhibitor resistance. ^[166]

The heterogeneity in response to MEK inhibition in KRAS mutant lung cancers is attributed to the presence of activated AKT or STAT3 pathway, thus providing rationale for combination regimens with the corresponding inhibitors. ^[170] Moreover, the combination of a MEK inhibitor with either a PI3K inhibitor or BCL-XL inhibitor results in marked synergistic tumor regression in mice bearing KRAS-mutant lung cancers. ^[171],[28] Similarly, the addition of selumetinib, a MEK inhibitor, markedly improved the response of KRAS mutant tumors to docetaxel. ^[172] However, the concurrent loss of LKB1 (also known as STK11), a tumor suppressor gene, abrogated the synergistic effect of the combination of docetaxel with selumetinib in a KRAS mutant lung tumor model, likely through activated AKT and SRC pathways. ^[173] This is very relevant as concurrent KRAS and LKB1 mutation is observed in 4-10% of NSCLC. Although there are no published reports of MEK inhibition in NF1-deficient lung cancer models specifically at this time, lessons can be extrapolated from other tumor models. MEK inhibition can suppress the growth of NF1-deficient acute myeloid leukemias ^[174] and myeloproliferative disorders ^[175] but is only effective against a subset of NF-1 deficient GBM (glioblastoma multiforme). ^[176] In NF1-deficient GBM resistant to MEK inhibition alone, combination therapy with a dual PI3K/mTOR inhibitor overcomes this treatment resistance. ^[176] On a similar theme, HER3 activation that results in recruitment of PI3K/AKT signaling was observed to underlie the resistance to dual BRAF and MEK inhibition in melanoma. ^[177]

Several potent and selective MEK inhibitors such as selumetinib (AZD6244) and trametenib (GSK1120212) are in clinical testing for NSCLC. Other MEK inhibitors, such as GDC-0973 (XL518), refametinib (BAY 86-9766, RDEA119), pimasertib (AS703026/MSC1936369B), MEK162, WX-554, etc., are in early clinical development. [Table 4] highlights several clinical trials, either ongoing or soon to be activated, of various targeted therapies in development. A randomized, placebo-controlled Phase II study of selumetinib plus docetaxel in KRAS-mutant NSCLC has shown promising efficacy, albeit with a higher number of adverse events than docetaxel alone in previously treated advanced KRAS-mutant NSCLC. ^[178] A phase I trial of selumetinib in combination with the dual EGFR/VEGFR inhibitor vandetanib is ongoing, with planned expansion cohort in NSCLC. There are multiple studies underway evaluating the combination of a MEK inhibitor with inhibitors of the PI3K/AKT/mTOR pathway, which will be discussed later. Various ERK inhibitors such as BVD-523 and MK-8353 (SCH 900353) are in early clinical testing. The combination of PI3K inhibitor and the ERK inhibitor shows synergistic antiproliferative activity in preclinical models. ^[179] Similarly, the dual PI3K/ERK inhibitor AEZS-132 demonstrated significant activity in several xenograft models. ^[180]

Tumor responses in NSCLC with BRAF V600E mutation had been reported with vemurafenib (currently approved for use in advanced stage melanoma) and dabrafenib, both potent inhibitors of wild-type BRAF, BRAF V600E and C-RAF. ^{[181],[182],[183]} Other BRAF inhibitors in development include ARQ736, RO5212054 (PLX3603), LGX818 and RAF265 (dual BRAF/VEGFR2 inhibitor). An open-label, Phase II study of vemurafenib (NCRN396:VE BASKET study) is ongoing for BRAF V600 mutation-positive solid tumors (excluding melanoma and papillary thyroid cancer). A cautionary note with BRAF inhibitors in general is that in cells with mutant RAS or wild-type RAS/RAF, paradoxical ERK pathway activation by RAF inhibitors has been well-described by various investigators due to RAF dimerization, leading to CRAF activation. ^{[158],[184],[185]} This is thought to explain the occurrence of cutaneous SCC/keratoacanthomas in some patients who were treated with BRAF inhibitors as monotherapy. Newer generation agents are thus being developed that can overcome this paradoxical activation, so-called “paradox breakers,” such as PLX PB-3, which do not activate the MAPK pathway in cells with activated RAS or EGFR and do not upregulate EGFR ligands. ^[186] Alternatively, combination of BRAF inhibitor and MEK inhibitor can overcome this limitation and this approach has shown clinical efficacy and better safety profile as predicted by the preclinical models.

Knowledge on acquired resistance to BRAF inhibitors are largely derived from melanoma studies. In contrast to many TKI inhibitors, acquisition of secondary gatekeeper mutations in the RAF kinase has yet to be reported in clinical cases of acquired resistance. Mechanisms involved either reactivation of MAPK pathway (e.g. V600E BRAF amplification; alternate splicing of BRAF; CRAF overexpression; upregulation of COT kinase, FGFR or PDGFRβ; activating mutations in NRAS or MEK1) ^{[187],[188],[189],[190],[191],[192]} or alternate MAPK-independent pathway signaling, e.g., activating PI3K/mTOR/AKT pathway through PIK3CA mutations. ^[193] An interesting observation reported recently is that vemurafenib-resistant melanomas acquire dependence on vemurafenib for their continued proliferation. Drug cessation in fact results in regression of drug-resistant tumors, thus providing a rationale for investigating an intermittent schedule of drug administration to delay the onset of acquired resistance. ^[32] In the case of NSCLC, acquired resistance to dabrafenib through the emergence of KRAS mutation has been recently described in a case report. ^[183]

MET/hepatocyte growth factor pathway

MET factor receptor or HGF receptor triggers key intracellular signaling cascades, such as Src, STAT3, PIK3/AKT/mTOR and RAS/RAF/MAPK, upon binding to its ligand HGF [Figure 1]. ^[194] MET kinase is implicated in cancer cell proliferation, invasion, migration and angiogenesis. Dysregulation of the HGF/MET signaling pathway can occur through HGF or MET overexpression, MET gene amplification and mutations. ^[30] MET amplification occurs in 1-5% of unselected early-stage NSCLC cases, which have been associated with poor prognosis. ^[30] Engelman et al. reported that 22% of lung cancers with acquired resistance to EGFR TKIs had MET amplification, driving HER3-dependent activation of PI3K. ^[72]

Several strategies to antagonize MET signaling are currently under investigation, such as anti-HGF mAb (ficlatuzumab, rilotumumab and TAK701), Anti-MET mAb (onartuzumab) and TKIs (both selective and non-selective TKIs). Accrual to the randomized Phase III trial evaluating the combination of the selective non-ATP dependent c-MET TKI tivantinib (ARQ 197) and erlotinib compared to erlotinib combined with the placebo as second-line therapy in advanced EGFR TKI-naïve NSCLC patients was halted in October 2012 after a planned interim analysis revealed lack of PFS improvement in the overall population and that the primary endpoint of OS improvement will not be met. ^[195] In comparison, the randomized, placebo-controlled Phase III study of onartuzumab (MetMab) in combination with erlotinib versus erlotinib in NSCLC patients with Met-positive tumor as determined by immunohistochemistry (IHC) is ongoing. The rationale for the study was based on promising PFS and OS data with the onartuzumab/erlotinib combination compared to erlotinib/placebo in the preceding randomized Phase II study in patients with Met-positive tumors. ^[196]

Cabozantinib and crizotinib are both oral TKIs that include c-met in their spectrum of activity. There is a case report of durable tumor response seen with crizotinib in a NSCLC patient with de novo MET amplification, but without ALK translocation attesting to additional clinical settings for the use of crizotinib in NSCLC. ^[197] The combination of crizotinib with the pan-ErbB inhibitor dacomitinib is being evaluated in an ongoing Phase I study (NCT01121575). ^[198] Similarly, the c-MET and AXL inhibitory profile of cabozantinib provides rationale for its combination with EGFR TKI to overcome and delay treatment resistance. A Phase I/II study of cabozantinib with erlotinib reported partial tumor response seen in a patient with MET amplification. ^[108] A PR with cabozantinib monotherapy was also recently reported in a patient with ALK fusion-positive tumor, ^[199] implying either the co-existence of activated c-met signaling in the tumor or that cabozantinib has potential ALK inhibitory activity as well. Although the current understanding of mechanisms of acquired resistance to c-MET inhibitors is limited, preclinical cellular models of acquired resistance show that wild-type KRAS amplification and overexpression provides a mechanism of escape from MET dependence, thus overcoming the inhibitory effect of a c-met TKI. ^[200] Another mechanism documented to date is the emergence of secondary mutations in the MET kinase domain, some of which are identical to known activating mutations in the MET kinase domain, such as Y1230C and D1228N, found in patients with papillary renal cell carcinoma. ^[31]

PI3K/AKT/mTOR pathway

The PI3K/AKT/mTOR signaling pathway was first identified in the 1990s. ^[201] It is activated early in lung carcinogenesis by multiple signaling nodes such as RAS, EGFR, IGF-1R and c-MET [Figure 1]. It plays a role in cell growth, cell proliferation, angiogenesis and anti-apoptosis/cell survival, which mediates treatment resistance against systemic chemotherapy and radiation. The main downstream signaling hub is mediated by mTOR in response to growth factor stimuli and leads to the modulation of the eukaryotic initiation factor 4E binding protein-1 and the 40S ribosomal protein S6 kinase involved in the regulation of translation and protein synthesis [Figure 1]. ^[202] The tumor suppressor gene phosphatase and tensin homolog (PTEN) inhibits the PI3K/AKT signaling pathway by dephosphorylating PIP3 to inactivate AKT. Loss or inactivating mutations of PTEN results in hyperactivation of the PI3K pathway, similar to what is achieved by somatic activating “gain of function” mutations in the PIK3CA gene itself. This explains the observation that these two events are mutually exclusive in most human tumors. ^[203] Furthermore, loss of PTEN with subsequent pAKT overexpression is associated with poor prognosis. ^[204] Loss of PTEN as assessed by absent PTEN protein expression determined by IHC is found in 24-44% of NSCLC and up to 75% if cases with weak PTEN expression were included. ^[37],[38] Epigenetic silencing may partially explain PTEN loss in some cases as mutations or homozygous deletions of PTEN gene are rare in NSCLC. ^[39]

Mutation and amplification of PIK3CA, the gene that encodes the catalytic p110 subunit α isoform of PI3K principally involved in regulating cell proliferation and growth, is found in up to10% and up to 45% of patients with NSCLC respectively and is associated with increased PI3K activity and AKT expression. ^[35],[36] Preclinical as well as early clinical studies have shown that the presence of PIK3CA mutations in cancer cells confer treatment sensitivity to single-agent PI3K pathway inhibitors. ^[205] However, PIK3CA mutations can frequently occur simultaneously with other oncogenic drivers such as activating mutations in the MAPK pathway, particularly with lung adenocarcinomas where this is estimated to occur in 49-86% of cases. ^{[205],[206],[207]} Treatment resistance to PI3K inhibitor monotherapy is anticipated and documented in preclinical models with this dual activated PI3K/MAPK genotypic profile. ^[28],[208] However, this compound pathway activation may not necessarily predict lack of clinical benefit when PI3K inhibitors are used in combination with cytotoxic agents or even as monotherapy in some settings such as in gynecologic malignancies. ^{[12],[205],[209]} Lastly, the oncogenic E17K mutation in AKT1, the isoform principally involved in regulating cellular processes such as apoptosis, is rare in NSCLC and primarily found in SQCLC with prevalence of approximately 1-1.5%. ^[210] This mutation is associated with increased membrane localization and autophosphorylation of AKT1. ^[211] This mutation also appears to be generally mutually exclusive with PIK3CA mutations, again suggesting functional redundancy in the evolution of the hyperactivated PI3K pathway phenotype. ^[212]

Various PI3K inhibitors, which include isoform-specific, pan-class I or dual PI3K/mTORC inhibitors, are in clinical development. Despite the broad similarities of p110 α with other protein kinases, mutagenesis studies to anticipate mechanisms of acquired resistance suggest that appearance of secondary mutations, unlike the case with TKIs, appear unlikely to be the cause of resistance to PI3K inhibitors since most mutations led to loss of enzymatic activity. ^[213] This was also true for analogous gatekeeper mutations, which render the kinase either catalytically inactive or with minimal function. Instead, preclinical models suggest that overexpression of IGF-1R can mediate resistance, whereas targeted functional inhibition or knockdown of IGF-1R expression can reverse PI3K resistance. ^[214] A number of ATP-competitive pan-AKT inhibitors are in early clinical development (GSK2110183, GSK 2141795, GDC-0068, AZD5363). These agents induce hyperphosphorylation of AKT, a phenomenon termed “inhibitor hijacking of kinase activation,” resulting in AKT membrane localization though in a nonfunctional state while downstream signaling is inhibited. ^[215] Non-ATP competitive allosteric inhibitors, such as MK2206, are thought to have less off-target effects and do not induce hyperphosphorylation of AKT at the threonine 308 and serine 473 residues, thus with no theoretical concerns of untoward effects during drug dissociation from the catalytically active hyperphosphorylated AKT. Lastly, dual mTORC1 and 2 inhibitors were developed to overcome the limitation of paradoxical feedback activation of AKT with first-generation rapalogs which inhibit mTORC1 (downstream to AKT), but not mTORC2 (upstream to AKT). ^[216]

Owing to the highly interconnected relationship between the PI3K/AKT/mTOR and RAF/RAF/MEK/ERK pathways along with preclinical evidence showing superior outcomes with dual pathway-blockade particularly in tumors with compound mutations, several clinical trials have been launched exploring such combination strategies. Early phase studies suggest that dual inhibition may potentially exhibit improved antitumor efficacy compared with single-pathway inhibition, although potentially at the cost of increased toxicities such as skin rash, mucositis and transaminase elevations for some combinations of MEK inhibitors (selumetinib or trametinib) with either AKT inhibitor (MK2206 or GSK2141765) or the mTOR inhibitor everolimus. ^[217] In comparison, the combination of the MEK inhibitor GDC-0973 with the pan-PI3K inhibitor GDC-0941 ^[218] can be safely combined to date. Similarly, the combination of trametinib with the PI3K inhibitor BKM120 appears to be tolerable as well. ^[219] Although dose escalation is still ongoing for both studies, objective tumor responses have already been seen in patients with RAS/RAF mutant tumors (melanoma, pancreatic cancer, gynecologic malignances). Because increased toxicity from this combination is anticipated with continuous treatment, alternative dosing schedules (i.e. interrupted dosing of one or both agents) were tested in various preclinical models, which exhibited similar cytotoxicity to continuous dual inhibition, thus providing rationale for intermittent dosing, which was explored in the Phase I study of GDC-0973 and GDC-0941. ^[118],[220] Indeed, early clinical data suggest that higher doses can be tolerated with intermittent dosing compared with the continuous schedule. ^[218] A number of Phase I studies evaluating continuous or intermittent dosing schedules of other MEK and/or PI3K inhibitors are ongoing, with expansion cohorts planned to include patients with NSCLC. Several Phase Ib/II studies of EGFR TKI (erlotinib, gefitinib, vandetanib) in combination with inhibitors of the PI3K/AKT/mTOR pathway, such as BKM120, MK2206 (AKT inhibitor) or everolimus are either ongoing or underway, some of which incorporate enrichment strategies for patients with tumors that harbor the activated PI3K pathway signature (NCT01570296, NCT01487265, NCT01582191). Monotherapy trials using mTOR inhibitors, either as first or subsequent lines of therapy, showed minimal activity in the molecularly unselected population. ^[221],[222] The combination of gefitinib with everolimus similarly showed minimal activity in the molecularly unselected population. However, it was interesting to note that objective tumor responses were seen in two patients with the rare KRAS G12F mutation. However, overall RR in the KRAS mutant patients was low at 13%. ^[223] The combination of the irreversible EGFR TKI pelitinib (development discontinued) with temsirolimus was associated with moderate toxicities, with maximally tolerated dose of pelitinib at less than half of its monotherapy dose. ^[224] Lastly, the Phase I study of erlotinib in combination with the dual mTORC1/2 inhibitor XL765 has completed its dose-escalation, though updated results have not yet been reported. ^[225]

HSP90 pathway

HSP90 is a molecular chaperone involved in the posttranslational folding, stability, activation and maturation of over 200 client proteins, including oncogenic proteins such as EGFR, HER2, MET, BRAF, ALK, ROS1, RET, etc., and their mutant forms, essential to signal transduction and cell cycle. ^[226] It is also in turn regulated by several genetic and epigenetic mechanisms. Protein trafficking through HSP90 chaperone is not a system by itself, but it is a part of the ubiquitin proteasome system. ^[226],[227] Inhibition of HSP90 by antagonists, first established with geldanamycin and its derivatives such as 17-AAG (tanespimycin), abrogates its chaperone function and targets client proteins for proteasomal degradation. Due to the unique mechanism of action, inhibition of HSP90 has a broad therapeutic application, which includes potential activity in settings of acquired resistance to various targeted agents. However, early clinical development of HSP90 inhibitors was beleaguered by drug formulation and hepatotoxicity issues (thought to be related to the nucleophile reactions arising from the quinone component in the geldanamycin chemotype), in addition to tepid antitumor activity in the clinic. ^[227] Adding to the complexity, it is recognized that HSP90 inhibitors can paradoxically promote AKT and ERK activation, one mechanism of which is by transient activation of their client protein kinase. ^[228] Nonetheless, encouraging clinical responses in NSCLC patients with ALK rearrangements have been documented in various early phase studies across several HSP90 inhibitors. ^[121],[229] The recent study by Socinski et al. showed that ganetespib monotherapy had manageable side effect profile as well as clinical activity in heavily pretreated patients with advanced NSCLCs, particularly in patients with tumors harboring ALK gene rearrangement. ^[229] PFS rates at 16 weeks were 13.3%, 5.9-9.7% in patient with positive EGFR mutation, KRAS mutation and non-EGFR/non-KRAS mutation, respectively. Four patients out of 98 patients (4%) achieved PR; all had disease that harbored ALK gene rearrangement. ^[229] HSP90 inhibitors in development currently include the water water-soluble 17-AAG hydroquinone retaspimycin (IPI504), the non-quinone PU-H71 and the nongeldanamycin agents ganetespib (STA9090), AUY922, AT13387, DS-2248 and XL888. Clinical trials evaluating the combination of HSP90 inhibitors with EGFR, BRAF, ALK or PI3K inhibitors are either ongoing or underway (NCT01259089, NCT01657591, NCT01772797, NCT01613950, NCT01712217).
Additional Targets
Other recurrent mutations in several other kinase genes documented in large-scale genome sequencing projects, whose biological functions are largely uncharacterized, but may have therapeutic potential in NSCLC, are discussed below.

ROS1 rearrangement

ROS1 rearrangement, a newly discovered driver mutation in NSCLC, was discovered by Rikova et al in 2007. ^[230] The estimated incidence is approximately 2% of lung adenocarcinoma (both Asian and non-Asian populations) and the patient characteristics are similar to ALK and EGFR-mutation positive patients (non-smokers, adenocarcinoma histology). ^[4] Histologic examination in a small series of ROS1-rearranged NSCLC identified focal presence of either solid growth with signet-ring cells or cribriform architecture with abundant extracellular mucus in more than half of the cases, which phenotypically resemble ALK-rearranged NSCLC. ^[231] ROS1 is one of the RTKs, which consist of an extracellular ligand-binding domain, a short transmembrane domain and intracellular TK domain. ^[232] Wild-type ROS1 is located on chromosome 6. It has been previously reported that there is a 49% amino acid homology between human ROS and ALK within the kinase domain and 77% identity at the ATP-binding site. ^[233],[234] This led to the hypothesis that ALK inhibitors could act as ROS1 inhibitors which was subsequently confirmed in various preclinical studies. ^[234],[235] These rearrangements are also client proteins of the HSP pathway and thus similarly sensitive to treatment with HSP90 inhibitors. ^[120] Aberrant ROS1 kinase activity leads to downstream activation of PI3K/AKT/mTOR, RAS/RAF/MEK/MAPK, vav 3 guanine nucleotide exchange factor 1 (VAV3) and Src-homology 2 domain-containing phosphatase (SHP)-1 and -2 pathways. ^[236] Currently, 12 ROS1 fusion variants in NSCLC have been identified. ^[237] ROS1 fusions represent a unique molecular subset of NSCLC with no overlap with other oncogene drivers. Highly promising clinical activity of crizotinib with ORR of 50-60% in this patient population has been recently reported. ^[234] Other ALK inhibitors in development [Table 4] have varied activity against ROS1 in their spectrum of inhibition.

RET rearrangement

RET is a RTK involved in cell proliferation, neuronal navigation, cell migration and cell differentiation through signaling through a ligand/coreceptor/RET multiprotein complex that activates various downstream pathways such as the RAS/RAF/MEK/ERK, PI3K/AKT and STAT pathways. ^[142] Germline and somatic mutations in RET cause the multiple endocrine neoplasia type 2 syndrome and sporadic medullary thyroid cancer. ^[40],[41] Recently, a novel fusion gene between either KIF5B or coiled-coil domain containing 6 (CCDC6) and RET protooncogene (pericentric inversion in chromosome 10), was identified in lung adenocarcinoma. ^[42],[238] Takeuchi et al. screened for ALK and ROS1 gene rearrangement in 1528 patients with surgically removed tissues and discovered KIF5B-RET and CCDC6-RET fusion genes in 14 adenocarcinomas, mutually exclusive with EGFR and KRAS mutations. ^[238] Wang et al. also reported finding RET fusions with KIF5B, CCDC6, or nuclear receptor coactivator 4 in 13 out of 936 surgically resected NSCLC patients. ^[239] These studies estimate that RET fusions occur in approximately 1-2% of lung adenocarcinomas. ^{[42],[238],[239]} Tumors with RET fusion gene tend to be more poorly differentiated tumors in never smokers and are associated with tumor size ≤ 3 cm, but with N2 lymph node involvement. ^[239] Nonetheless, there appears to be no prognostic implication as there is no significant difference in recurrence-free survival and OS between RET-positive and RET-negative patients.

Vandetanib and cabozantinib (XL184) are small molecule inhibitors of multiple kinases including VEGFR2 and RET currently approved for treatment of metastatic medullary thyroid cancer. Other FDA-approved agents that demonstrate in vitro inhibition of RET include ponatinib (AP24534), axitinib, sunitinib and sorafenib. ^[240] Several Phase III studies of vandetanib, sunitinib and sorafenib had been conducted in previously treated, genotypically unselected NSCLC patients as monotherapy or in combination regimens. No OS benefit was seen compared with the control arms in all studies to date. ^[241],[242] Nevertheless, anecdotal evidence of clinical benefit had been reported with vandetanib and cabozantinib in RET-positive NSCLC. ^[243],[244] A Phase II study specific for patients with KIF5B-RET positive advanced NSCLC using cabozantinib (potent inhibitor of c-MET, VEGFR2, c-KIT, Flt 1/3/4, Tie2, AXL and RET) is currently ongoing (NCT01639508). Mechanisms of acquired resistance are yet to be elucidated, but it is interesting to note that the gatekeeper mutation (RET V804 L/M) resistant to vandetanib retains high affinity to sunitinib in preclinical models. ^[245] Similarly, ponatinib, an oral multikinase inhibitor, which is approved for use in chronic myeloid leukemia patients and demonstrated clinical efficacy against the ABL gatekeeper mutation T351I, has potent activity against RET kinase including the oncogenic RET V804M mutant resistant to vandetanib. ^[246] Phase II studies are being planned to evaluate vandetanib, sunitinib, as well as ponatinib monotherapy in NSCLC harboring RET translocations (NCT01823068, NCT01829217, NCT01813734).

JAK/STAT

The Janus kinase (JAK)/Signal Transducer and Activator of Transcription (STAT) signaling pathway is implicated in numerous cellular processes such as hematopoiesis and immunoregulation. ^[247] Discovery of a recurrent constitutively activating JAK2 mutation V617F in myeloproliferative disorders consequently led to the eventual testing and approval of ruxolitinib, an oral JAK1 and JAK2 inhibitor, in the treatment of myelofibrosis. Multiple other agents, such as pacritinib, SAR30203, CYT387, etc., are in development in hematologic malignancies. Mutations in all members of the JAK family of kinases (JAK1, JAK2, JAK3 and TYK2) are seen in 1.5-2% of NSCLC. ^[150]

FMS-like tyrosine kinase 3

FLT3 is a member of the Type III RTK which includes KIT and PDGFR. ^[248] This accounts for the close homology and consequently the overlapping spectrum of activity of various multikinase inhibitors such as sunitinib, sorafenib, nintedanib, dovitinib, etc., Activating mutations were first identified in hematologic malignancies, which subsequently were found to have a negative prognostic effect, spurring the development of more selective FLT3 inhibitors such as crenolanib, quizartinib, AC220, etc. ^[249] Various FLT3 mutations have been reported in approximately 2% of NSCLC. ^[150]

Trk family

Neurotrophins essential to the survival and function of neurons mediate their effects through one or more of the Trk family of RTKs (TrkA, TrkB and TrkC). Mutations in all three members have been reported in NSCLC, at a frequency of approximately 3-4% each. ^[150] Oncogenic TrkA and TrkC activity has been reported in some thyroid and colon cancers. ^[250],[251] However, functional characterization of some of the TrkB mutants revealed lack of transforming ability and thus of questionable role in patient selection for evaluation of Trk inhibitors such as the pan-Trk inhibitor PLX7486. ^[252] Other Trk inhibitors in development include the dual cyclin-dependent kinase/TrkA inhibitor PHA-848125AC and the TrkC inhibitor AZD7451.
Evolving Area of Targeted Approach in Immune Checkpoint Proteins
Tumor cells have the uncanny ability to evade the immune response and several approaches are being developed to boost anticancer responses of T-cells and restore their ability to detect and attack cancer cells. A better understanding of the intricate balance between T-cell co-stimulatory and inhibitory signals under physiological conditions and during aberrant immune evasion/resistance led to the recent development of mAbs blocking the cytotoxic lymphocyte-associated antigen 4 (CTLA4) and the programmed cell death protein 1 (PD-1)-mediated T-cell events. CTLA4 is expressed exclusively on T-cells where it regulates the early stages of T-cell activation by actively delivering inhibitory signals to the T-cell. It also mediates signaling-independent T-cell inhibition by sequestration of ligands to counteract the activity of the T-cell co-stimulatory receptor, CD28. ^[253] In contrast to the PD-1 pathways, there is no tumor specificity to the expression of the CTLA4 ligands. PD-1 is an immune checkpoint receptor expressed by activated T-cells and it mediates immunosuppression upon binding to PD-1 ligands (PD-L1 [B7-H1] and PD-L2 [B7-DC]), which are expressed by tumor cells, stromal cells, or both. ^{[254],[255],[256]} The major role of PD1 is to limit the autoimmunity and the inflammatory response in peripheral tissues by restricting T-cell activity. ^[253] Blockade of the interaction between PD-1 and PD-L1 potentiates immune responses in vitro and in vivo antitumor activity. ^[257],[258] In NSCLC tissue, PDL-1 positive cells are substantially increased when compared with adjacent lung parenchyma and PDL-1 expression on lung cancer cells also correlates with poor prognosis and decreased OS. ^[259] Ipilimumab, a fully human mAb against CTLA4, is already approved for use in advanced stages of melanoma. In NSCLC, a randomized Phase II trial of carboplatin with paclitaxel with or without ipilimumab showed a statistically significant improvement in immune-related PFS among patients who received the phased ipilimumab administration combination compared to those who received chemotherapy alone (5.7 vs. 4.6 mos, HR 0.72, P = 0.05), with subset analysis suggesting a trend toward greater clinical benefit among patients with SQCLC. ^[260] This prompted the design and activation of a Phase III trial of this combination as first-line therapy in patients with squamous cell histology (NCT01285609). Two different strategies were pursued in Phase I studies evaluating the feasibility of PD-1 pathway blockade: Topalian et al. investigated a mAb directed at PD-1 (nivolumab, BMS-936558) and Brahmer et al. used mAb targeting PD-L1 (BMS-936559). ^[261],[262] Over 200 patients were enrolled in each trial with large cohorts of NSCLC patients included (122/296 and 75/205 NSCLC patients for anti-PD-1 and anti-PD-L1, respectively). Both these trials demonstrated remarkable sustained tumor regressions in the heavily pre-treated advanced NSCLC patients, with RR of 18% for anti-PD-1 and 10% for anti-PD-L1. The Grade 3 and 4 drug-related adverse event rates were low, at 14-9% for anti-PD-1 and anti-PD-L1, respectively. This is a distinct advantage compared with the adverse event rates associated with ipilimumab. Histology-specific Phase III studies comparing nivolumab with docetaxel as second-line therapy for patients with squamous (NCT01642004) or nonsquamous NSCLC (NCT01673867) are ongoing. MAbs that can block other inhibitory receptors, such as anti-killer cell immunoglobulin-like receptors (KIRs), are also in early clinical development. Identification and validation of predictive biomarkers, such as tumor expression of PD-1, for these therapies are intense areas of investigation.
Conclusion
The discovery of EGFR mutations and EML4-ALK rearrangement revolutionized the first-line treatment of NSCLC by targeted agents (erlotinib, gefitinib and crizotinib) and triggered the paradigm shift in developing genotypically-driven clinical trials. Success in this approach has been confirmed largely in the population with metastatic disease and there are multiple studies ongoing or underway to further explore this in the adjuvant, neoadjuvant and post-radiation consolidation settings in NSCLC. Understanding the molecular drivers of NSCLC can assist in the optimal selection of therapy because distinct molecular subtypes may have overlapping clinical features but yet have heterogeneous outcomes to treatment. The development of novel targeted therapies represent an important and revolutionary change in oncology, but a common and inevitable theme is the specter of treatment resistance and thus investigations on the mechanisms of de novo and acquired resistance go hand-in-hand with drug development. In addition, the lack of significant activity of these targeted agents in the genotypically unselected patients underscores the need for a different approach in trial design during early phase clinical testing. With next-generation sequencing technologies discovering more genomic alterations and potential “druggable” targets, it is imperative to have a better understanding of the functional implications of these changes in order to establish the therapeutic relevance of purported drug targets and to facilitate the validation of biomarkers to be used in the identification of patients who will have the greatest likelihood of deriving benefit from target-specific therapies. Similarly, a better understanding of the therapeutic spectrum of available drugs will enable successful drug repurposing. All these efforts will ensure a more successful route from the initial steps of drug discovery to the final coveted phase of widespread clinical use, thereby maximizing the probability of treatment success while minimizing the risks of exposure to adverse drug reactions and ineffective therapies.
References

1.	Siegel R, Naishadham D, Jemal A. Cancer statistics, 2013. CA Cancer J Clin 2013;63:11-30.
2.	Mountain CF. The international system for staging lung cancer. Semin Surg Oncol 2000;18:106-15.
3.	Burgess DJ. Cancer genetics: Initially complex, always heterogeneous. Nat Rev Cancer 2011;11:153.
4.	Bergethon K, Shaw AT, Ou SH, Katayama R, Lovly CM, McDonald NT, et al. ROS1 rearrangements define a unique molecular class of lung cancers. J Clin Oncol 2012;30:863-70.
5.	Hammerman PS, Sos ML, Ramos AH, Xu C, Dutt A, Zhou W, et al. Mutations in the DDR2 kinase gene identify a novel therapeutic target in squamous cell lung cancer. Cancer Discov 2011;1:78-89.
6.	Ding L, Getz G, Wheeler DA, Mardis ER, McLellan MD, Cibulskis K, et al. Somatic mutations affect key pathways in lung adenocarcinoma. Nature 2008;455:1069-75.
7.	Hammerman PS, Laurence MS, Voet D, Jing R, Cibulskis K, Sivachenko, et al. Comprehensive genomic characterization of squamous cell lung cancers. Nature 2012;489:519-25.
8.	Hanahan D, Weinberg RA. Hallmarks of cancer: The next generation. Cell 2011;144:646-74.
9.	Imielinski M, Berger AH, Hammerman PS, Hernandez B, Pugh TJ, Hodis E, et al. Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Cell 2012;150:1107-20.
10.	Peifer M, Fernández-Cuesta L, Sos ML, George J, Seidel D, Kasper LH, et al. Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer. Nat Genet 2012;44:1104-10.
11.	Dy GK, Adjei AA. Understanding, recognizing, and managing toxicities of targeted anticancer therapies. CA Cancer J Clin 2013;63:249-79.
12.	Bendell JC, Rodon J, Burris HA, de Jonge M, Verweij J, Birle D, et al. Phase I, dose-escalation study of BKM120, an oral pan-Class I PI3K inhibitor, in patients with advanced solid tumors. J Clin Oncol 2012;30:282-90.
13.	Ohashi K, Sequist LV, Arcila ME, Lovly CM, Chen X, Rudin CM, et al. Characteristics of lung cancers harboring NRAS mutations. Clin Cancer Res 2013;19:2584-91.
14.	Marchetti A, Felicioni L, Malatesta S, Grazia Sciarrotta M, Guetti L, Chella A, et al. Clinical features and outcome of patients with non-small-cell lung cancer harboring BRAF mutations. J Clin Oncol 2011;29:3574-9.
15.	Mitsudomi T, Yatabe Y. Mutations of the epidermal growth factor receptor gene and related genes as determinants of epidermal growth factor receptor tyrosine kinase inhibitors sensitivity in lung cancer. Cancer Sci 2007;98:1817-24.
16.	Shigematsu H, Gazdar AF. Somatic mutations of epidermal growth factor receptor signaling pathway in lung cancers. Int J Cancer 2006;118:257-62.
17.	Amin HM, Lai R. Pathobiology of ALK+ anaplastic large-cell lymphoma. Blood 2007;110:2259-67.
18.	Inamura K, Takeuchi K, Togashi Y, Nomura K, Ninomiya H, Okui M, et al. EML4-ALK fusion is linked to histological characteristics in a subset of lung cancers. J Thorac Oncol 2008;3:13-7.
19.	Faoro L, Singleton PA, Cervantes GM, Lennon FE, Choong NW, Kanteti R, et al. EphA2 mutation in lung squamous cell carcinoma promotes increased cell survival, cell invasion, focal adhesions, and mammalian target of rapamycin activation. J Biol Chem 2010;285:18575-85.
20.	Ekman S, Frödin JE, Harmenberg J, Bergman A, Hedlund A, Dahg P, et al. Clinical Phase I study with an insulin-like growth Factor-1 receptor inhibitor: Experiences in patients with squamous non-small cell lung carcinoma. Acta Oncol 2011;50:441-7.
21.	Wu YM, Su F, Kalyana-Sundaram S, Khazanov N, Ateeq B, Cao X, et al. Identification of targetable FGFR gene fusions in diverse cancers. Cancer Discov 2013;3:636-47.
22.	Sequis0074 LV, Waltman BA, Dias-Santagata D, Digumarthy S, Turke AB, Fidias P, et al. Genotypic and histological evolution of lung cancers acquiring resistance to EGFR inhibitors. Sci Transl Med 2011;3:75ra26.
23.	Shigematsu H, Takahashi T, Nomura M, Majmudar K, Suzuki M, Lee H, et al. Somatic mutations of the HER2 kinase domain in lung adenocarcinomas. Cancer Res 2005;65:1642-6.
24.	Yu HA, Arcila ME, Rekhtman N, Sima CS, Zakowski MF, Pao W, et al. Analysis of tumor specimens at the time of acquired resistance to EGFR-TKI therapy in 155 patients with EGFR-mutant lung cancers. Clin Cancer Res 2013;19:2240-7.
25.	Cappuzzo F, Bemis L, Varella-Garcia M. HER2 mutation and response to trastuzumab therapy in non-small-cell lung cancer. N Engl J Med 2006;354:2619-21.
26.	Cappuzzo F, Varella-Garcia M, Shigematsu H, Domenichini I, Bartolini S, Ceresoli GL, et al. Increased HER2 gene copy number is associated with response to gefitinib therapy in epidermal growth factor receptor-positive non-small-cell lung cancer patients. J Clin Oncol 2005;23:5007-18.
27.	Montagut C, Settleman J. Targeting the RAF-MEK-ERK pathway in cancer therapy. Cancer Lett 2009;283:125-34.
28.	Engelman JA, Chen L, Tan X, Crosby K, Guimaraes AR, Upadhyay R, et al. Effective use of PI3K and MEK inhibitors to treat mutant Kras G12D and PIK3CA H1047R murine lung cancers. Nat Med 2008;14:1351-6.
29.	Smalley KS, Xiao M, Villanueva J, Nguyen TK, Flaherty KT, Letrero R, et al. CRAF inhibition induces apoptosis in melanoma cells with non-V600E BRAF mutations. Oncogene 2009;28:85-94.
30.	Birchmeier C, Birchmeier W, Gherardi E, Vande Woude GF. Met, metastasis, motility and more. Nat Rev Mol Cell Biol 2003;4:915-25.
31.	Tiedt R, Degenkolbe E, Furet P, Appleton BA, Wagner S, Schoepfer J, et al. A drug resistance screen using a selective MET inhibitor reveals a spectrum of mutations that partially overlap with activating mutations found in cancer patients. Cancer Res 2011;71:5255-64.
32.	Das Thakur M, Salangsang F, Landman AS, Sellers WR, Pryer NK, Levesque MP, et al. Modelling vemurafenib resistance in melanoma reveals a strategy to forestall drug resistance. Nature 2013;494:251-5.
33.	Li M, Liu L, Liu Z, Yue S, Zhou L, Zhang Q, et al. The status of KRAS mutations in patients with non-small cell lung cancers from mainland China. Oncol Rep 2009;22:1013-20.
34.	Ramos AH, Dutt A, Mermel C, Perner S, Cho J, Lafargue CJ, et al. Amplification of chromosomal segment 4q12 in non-small cell lung cancer. Cancer Biol Ther 2009;8:2042-50.
35.	Okudela K, Suzuki M, Kageyama S, Bunai T, Nagura K, Igarashi H, et al. PIK3CA mutation and amplification in human lung cancer. Pathol Int 2007;57:664-71.
36.	Spoerke JM, O′Brien C, Huw L, Koeppen H, Fridlyand J, Brachmann RK, et al. Phosphoinositide 3-kinase (PI3K) pathway alterations are associated with histologic subtypes and are predictive of sensitivity to PI3K inhibitors in lung cancer preclinical models. Clin Cancer Res 2012;18:6771-83.
37.	Marsit CJ, Zheng S, Aldape K, Hinds PW, Nelson HH, Wiencke JK, et al. PTEN expression in non-small-cell lung cancer: Evaluating its relation to tumor characteristics, allelic loss, and epigenetic alteration. Hum Pathol 2005;36:768-76.
38.	Soria JC, Lee HY, Lee JI, Wang L, Issa JP, Kemp BL, et al. Lack of PTEN expression in non-small cell lung cancer could be related to promoter methylation. Clin Cancer Res 2002;8:1178-84.
39.	Jin G, Kim MJ, Jeon HS, Choi JE, Kim DS, Lee EB, et al. PTEN mutations and relationship to EGFR, ERBB2, KRAS, and TP53 mutations in non-small cell lung cancers. Lung Cancer 2010;69:279-83.
40.	Phay JE, Shah MH. Targeting RET receptor tyrosine kinase activation in cancer. Clin Cancer Res 2010;16:5936-41.
41.	Blaugrund JE, Johns MM Jr, Eby YJ, Ball DW, Baylin SB, Hruban RH, et al. RET proto-oncogene mutations in inherited and sporadic medullary thyroid cancer. Hum Mol Genet 1994;3:1895-7.
42.	Kohno T, Ichikawa H, Totoki Y, Yasuda K, Hiramoto M, Nammo T, et al. KIF5B-RET fusions in lung adenocarcinoma. Nat Med 2012;18:375-7.
43.	Olaso E, Labrador JP, Wang L, Ikeda K, Eng FJ, Klein R, et al. Discoidin domain receptor 2 regulates fibroblast proliferation and migration through the extracellular matrix in association with transcriptional activation of matrix metalloproteinase-2. J Biol Chem 2002;277:3606-13.
44.	Salomon DS, Brandt R, Ciardiello F, Normanno N. Epidermal growth factor-related peptides and their receptors in human malignancies. Crit Rev Oncol Hematol 1995;19:183-232.
45.	Normanno N, Bianco C, Strizzi L, Mancino M, Maiello MR, De Luca A, et al. The ErbB receptors and their ligands in cancer: An overview. Curr Drug Targets 2005;6:243-57.
46.	Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, et al. Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 2004;350:2129-39.
47.	He M, Capelletti M, Nafa K, Yun CH, Arcila ME, Miller VA, et al. EGFR exon 19 insertions: A new family of sensitizing EGFR mutations in lung adenocarcinoma. Clin Cancer Res 2012;18:1790-7.
48.	Fukuoka M, Wu YL, Thongprasert S, Sunpaweravong P, Leong SS, Sriuranpong V, et al. Biomarker analyses and final overall survival results from a phase III, randomized, open-label, first-line study of gefitinib versus carboplatin/paclitaxel in clinically selected patients with advanced non-small-cell lung cancer in Asia (IPASS). J Clin Oncol 2011;29:2866-74.
49.	Mok TS, Wu YL, Thongprasert S, Yang CH, Chu DT, Saijo N, et al. Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinoma. N Engl J Med 2009;361:947-57.
50.	Han JY, Park K, Kim SW, Lee DH, Kim HY, Kim HT, et al. First-SIGNAL: First-line single-agent iressa versus gemcitabine and cisplatin trial in never-smokers with adenocarcinoma of the lung. J Clin Oncol 2012;30:1122-8.
51.	Mitsudomi T, Morita S, Yatabe Y, Negoro S, Okamoto I, Tsurutani J, et al. Gefitinib versus cisplatin plus docetaxel in patients with non-small-cell lung cancer harbouring mutations of the epidermal growth factor receptor (WJTOG3405): An open label, randomised phase 3 trial. Lancet Oncol 2010;11:121-8.
52.	Maemondo M, Inoue A, Kobayashi K, Sugawara S, Oizumi S, Isobe H, et al. Gefitinib or chemotherapy for non-small-cell lung cancer with mutated EGFR. N Engl J Med 2010;362:2380-8.
53.	Zhou C, Wu YL, Chen G, Feng J, Liu XQ, Wang C, et al. Erlotinib versus chemotherapy as first-line treatment for patients with advanced EGFR mutation-positive non-small-cell lung cancer (OPTIMAL, CTONG-0802): A multicentre, open-label, randomised, phase 3 study. Lancet Oncol 2011;12:735-42.
54.	Rosell R, Carcereny E, Gervais R, Vergnenegre A, Massuti B, Felip E, et al. Erlotinib versus standard chemotherapy as first-line treatment for European patients with advanced EGFR mutation-positive non-small-cell lung cancer (EURTAC): A multicentre, open-label, randomised phase 3 trial. Lancet Oncol 2012;13:239-46.
55.	Cappuzzo F, Ciuleanu T, Stelmakh L, Cicenas S, Szczésna A, Juhász E, et al. Erlotinib as maintenance treatment in advanced non-small-cell lung cancer: A multicentre, randomised, placebo-controlled phase 3 study. Lancet Oncol 2010;11:521-9.
56.	Miller VA, O′ Connor P, Soh C, Kabbinavar F. A randomized, double-blind, placebo-controlled, phase IIIb trial (ATLAS) comparing bevacizumab (B) therapy with or without erlotinib (E) after completion of chemotherapy iwth B for first-line treatment of locall advanced, recurrent, or metastatic non-small cell lung cancer (NSCLC). J Clin Oncol 2009;27:18s (suppl; abstr LBA8002).
57.	Takeda K, Hida T, Sato T, Ando M, Seto T, Satouchi M, et al. Randomized phase III trial of platinum-doublet chemotherapy followed by gefitinib compared with continued platinum-doublet chemotherapy in Japanese patients with advanced non-small-cell lung cancer: Results of a west Japan thoracic oncology group trial (WJTOG0203). J Clin Oncol 2010;28:753-60.
58.	Shepherd FA, Rodrigues Pereira J, Ciuleanu T, Tan EH, Hirsh V, Thongprasert S, et al. Erlotinib in previously treated non-small-cell lung cancer. N Engl J Med 2005;353:123-32.
59.	Thatcher N, Chang A, Parikh P, Rodrigues Pereira J, Ciuleanu T, von Pawel J, et al. Gefitinib plus best supportive care in previously treated patients with refractory advanced non-small-cell lung cancer: Results from a randomised, placebo-controlled, multicentre study (Iressa Survival Evaluation in Lung Cancer). Lancet 2005;366:1527-37.
60.	Kim ES, Hirsh V, Mok T, Socinski MA, Gervais R, Wu YL, et al. Gefitinib versus docetaxel in previously treated non-small-cell lung cancer (INTEREST): A randomised phase III trial. Lancet 2008;372:1809-18.
61.	Pirker R, Pereira JR, Szczesna A, von Pawel J, Krzakowski M, Ramlau R, et al. Cetuximab plus chemotherapy in patients with advanced non-small-cell lung cancer (FLEX): An open-label randomised phase III trial. Lancet 2009;373:1525-31.
62.	Garassino MC, Martelli O, Bettini A, Floriani I, Copreni, E, Lauricella, C et al. TAILOR: Phase III trial comparing erlotinib with docetaxel in the second-line treatment of NSCLC patients with wild-type (wt) EGFR. J Clin Oncol 2012;30 (suppl; abstract LBA7501).
63.	Herbst RS, Ansari R, Bustin F, Flynn P, Hart L, Otterson GA, et al. Efficacy of bevacizumab plus erlotinib versus erlotinib alone in advanced non-small-cell lung cancer after failure of standard first-line chemotherapy (BeTa): A double-blind, placebo-controlled, phase 3 trial. Lancet 2011;377:1846-54.
64.	Sequist LV, Yang JC, Yamamoto N, O′Byrne K, Hirsh V, Mok T, et al. Phase III Study of afatinib or cisplatin plus pemetrexed in patients with metastatic lung adenocarcinoma with EGFR mutations. J Clin Oncol 2013;31:3327-34.
65.	Hirsch FR, Herbst RS, Olsen C, Chansky K, Crowley J, Kelly K, et al. Increased EGFR gene copy number detected by fluorescent in situ hybridization predicts outcome in non-small-cell lung cancer patients treated with cetuximab and chemotherapy. J Clin Oncol 2008;26:3351-7.
66.	Khambata-Ford S, Harbison CT, Hart LL, Awad M, Xu LA, Horak CE, et al. Analysis of potential predictive markers of cetuximab benefit in BMS099, a phase III study of cetuximab and first-line taxane/carboplatin in advanced non-small-cell lung cancer. J Clin Oncol 2010;28:918-27.
67.	Engelman JA, Jänne PA. Mechanisms of acquired resistance to epidermal growth factor receptor tyrosine kinase inhibitors in non-small cell lung cancer. Clin Cancer Res 2008;14:2895-9.
68.	Thomas RK, Greulich H, Yuza Y, Lee JC, Tengs T, Feng W, et al. Detection of oncogenic mutations in the EGFR gene in lung adenocarcinoma with differential sensitivity to EGFR tyrosine kinase inhibitors. Cold Spring Harb Symp Quant Biol 2005;70:73-81.
69.	Ercan D, Xu C, Yanagita M, Monast CS, Pratilas CA, Montero J, et al. Reactivation of ERK signaling causes resistance to EGFR kinase inhibitors. Cancer Discov 2012;2:934-47.
70.	Ohashi K, Sequist LV, Arcila ME, Moran T, Chmielecki J, Lin YL, et al. Lung cancers with acquired resistance to EGFR inhibitors occasionally harbor BRAF gene mutations but lack mutations in KRAS, NRAS, or MEK1. Proc Natl Acad Sci U S A 2012;109:E2127-33.
71.	Pao W, Wang TY, Riely GJ, Miller VA, Pan Q, Ladanyi M, et al. KRAS mutations and primary resistance of lung adenocarcinomas to gefitinib or erlotinib. PLoS Med 2005;2:e17.
72.	Engelman JA, Zejnullahu K, Mitsudomi T, Song Y, Hyland C, Park JO, et al. MET amplification leads to gefitinib resistance in lung cancer by activating ERBB3 signaling. Science 2007;316:1039-43.
73.	Ng KP, Hillmer AM, Chuah CT, Juan WC, Ko TK, Teo AS, et al. A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer. Nat Med 2012;18:521-8.
74.	Byers LA, Diao L, Wang J, Saintigny P, Girard L, Peyton M, et al. An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance. Clin Cancer Res 2013;19:279-90.
75.	Huang S, Hölzel M, Knijnenburg T, Schlicker A, Roepman P, McDermott U, et al. MED12 controls the response to multiple cancer drugs through regulation of TGF-β receptor signaling. Cell 2012;151:937-50.
76.	Zhang Z, Lee JC, Lin L, Olivas V, Au V, LaFramboise T, et al. Activation of the AXL kinase causes resistance to EGFR-targeted therapy in lung cancer. Nat Genet 2012;44:852-60.
77.	Stephens P, Hunter C, Bignell G, Edkins S, Davies H, Teague J, et al. Lung cancer: Intragenic ERBB2 kinase mutations in tumours. Nature 2004;431:525-6.
78.	Arcila ME, Chaft JE, Nafa K, Roy-Chowdhuri S, Lau C, Zaidinski M, et al. Prevalence, clinicopathologic associations, and molecular spectrum of ERBB2 (HER2) tyrosine kinase mutations in lung adenocarcinomas. Clin Cancer Res 2012;18:4910-8.
79.	Wang SE, Narasanna A, Perez-Torres M, Xiang B, Wu FY, Yang S, et al. HER2 kinase domain mutation results in constitutive phosphorylation and activation of HER2 and EGFR and resistance to EGFR tyrosine kinase inhibitors. Cancer Cell 2006;10:25-38.
80.	Li C, Sun Y, Fang R, Han X, Luo X, Wang R, et al. Lung adenocarcinomas with HER2-activating mutations are associated with distinct clinical features and HER2/EGFR copy number gains. J Thorac Oncol 2012;7:85-9.
81.	Pellegrini C, Falleni M, Marchetti A, Cassani B, Miozzo M, Buttitta F, et al. HER-2/Neu alterations in non-small cell lung cancer: A comprehensive evaluation by real time reverse transcription-PCR, fluorescence in situ hybridization, and immunohistochemistry. Clin Cancer Res 2003;9:3645-52.
82.	Boyer MJ, Blackhall FH, Park K, Barrios CH, Krzakowski MJ, Taylor I, et al. Efficacy and safety of PF0299804 versus erlotinib (E): A global, randomized phase II trial in patient (pts) with advanced non-small cell lung cancer (NSCLC) after failure of chemotherapy (CT). J Clin Oncol 2010;28:18s (suppl; abstract LBA7523).
83.	Miller VA, Hirsh V, Cadranel J, Chen YM, Park K, Kim SW, et al. Afatinib versus placebo for patients with advanced, metastatic non-small-cell lung cancer after failure of erlotinib, gefitinib, or both, and one or two lines of chemotherapy (LUX-Lung 1): A phase 2b/3 randomized trial. Lancet Oncol 2012;13:528-38.
84.	Sequist LV, Yang JC, Tsai CM, Su WC, Yamamoto N, Kato T, et al. Phase III study of afatinib or cisplatin plus pemetrexed in patients with metastatic lung adenocarcinoma with EGFR mutations. J Clin Oncol 2013;31:3327-34.
85.	Sequist LV, Besse B, Lynch TJ, Miller VA, Wong KK, Gitlitz B, et al. Neratinib, an irreversible pan-ErbB receptor tyrosine kinase inhibitor: Results of a phase II trial in patients with advanced non-small-cell lung cancer. J Clin Oncol 2010;28:3076-83.
86.	Yasuda H, Kobayashi S, Costa DB. EGFR exon 20 insertion mutations in non-small-cell lung cancer: Preclinical data and clinical implications. Lancet Oncol 2012;13:e23-31.
87.	Grommes C, Oxnard GR, Kris MG, Miller VA, Pao W, Holodny AI, et al. “Pulsatile” high-dose weekly erlotinib for CNS metastases from EGFR mutant non-small cell lung cancer. Neuro Oncol 2011;13:1364-9.
88.	Arcila ME, Nafa K, Chaft JE, Rekhtman N, Lau C, Reva BA, et al. EGFR exon 20 insertion mutations in lung adenocarcinomas: Prevalence, molecular heterogeneity, and clinicopathologic characteristics. Mol Cancer Ther 2013;12:220-9.
89.	Jänne PA, Boss DS, Camidge DR, Britten CD, Engelman JA, Garon EB, et al. Phase I dose-escalation study of the pan-HER inhibitor, PF299804, in patients with advanced malignant solid tumors. Clin Cancer Res 2011;17:1131-9.
90.	Yasuda H, Sng NJ, Yeo WL, Figueiredo-Pontes LL, Kobayashi S, Costa D. Sensitivity of EGFR exon 20 insertion mutations to EGFR inhibitors is determined by their location within the tyrosine kinase domain of EGFR. Cancer Res 2012;72;(8s): (suppl; abstrat 23).
91.	De Grève J, Teugels E, Geers C, Decoster L, Galdermans D, De Mey J, et al. Clinical activity of afatinib (BIBW 2992) in patients with lung adenocarcinoma with mutations in the kinase domain of HER2/neu. Lung Cancer 2012;76:123-7.
92.	Mazières J, Peters S, Lepage B, Cortot AB, Barlesi F, Beau-Faller M, et al. Lung cancer that harbors an HER2 mutation: Epidemiologic characteristics and therapeutic perspectives. J Clin Oncol 2013;31:1997-2003.
93.	Sakuma Y, Yamazaki Y, Nakamura Y, Yoshihara M, Matsukuma S, Nakayama H, et al. WZ4002, a third-generation EGFR inhibitor, can overcome anoikis resistance in EGFR-mutant lung adenocarcinomas more efficiently than Src inhibitors. Lab Invest 2012;92:371-83.
94.	Walter AO, Tjin R, Haringsma H, Lin K, Dubrovskiy, Lee K, et al. CO-1686, an orally available, mutant-selective inhibitor of the epidermal growth factor receptor (EGFR), causes tumor shrinkage in non-small cell lung cancer (NSCLC) with T790M resistance mutations. Mol Cancer Ther 2011;10: (suppl; abstrC189).
95.	Cha MY, Lee KO, Kim M, Song JY, Lee KH, Park J, et al. Antitumor activity of HM781-36B, a highly effective pan-HER inhibitor in erlotinib-resistant NSCLC and other EGFR-dependent cancer models. Int J Cancer 2012;130:2445-54.
96.	Gendreau SB, Ventura R, Keast P, Laird AD, Yakes FM, Zhang W, et al. Inhibition of the T790M gatekeeper mutant of the epidermal growth factor receptor by EXEL-7647. Clin Cancer Res 2007;13:3713-23.
97.	Rivera VM, Wang F, Anjum R, Zhang S, Squillace R, Keats J, et al. AP26113 is a dual ALK/EGFR inhibitor: Characterization against EGFR T790M in cell and mouse models of NSCLC. Cancer Res 2012;72: (suppl; abstr 1794).
98.	Pietanza MC, Lynch TJ Jr, Lara PN Jr, Cho J, Yanagihara RH, Vrindavanam N, et al. XL647 – A multitargeted tyrosine kinase inhibitor: Results of a phase II study in subjects with non-small cell lung cancer who have progressed after responding to treatment with either gefitinib or erlotinib. J Thorac Oncol 2012;7:219-26.
99.	Camidge DR, Bazhenova L, Salgia R, Weiss GJ, Langer CJ, Shaw AT, et al. A first-in-human dose-finding study of the ALK/EGFR inhibitor AP26113 in patients with advanced malignancies: Updated results. J Clin Oncol 2013;31:(suppl; abstr 8031).
100.	Janjigian YY, Azzoli CG, Krug LM, Pereira LK, Rizvi NA, Pietanza MC, et al. Phase I/II trial of cetuximab and erlotinib in patients with lung adenocarcinoma and acquired resistance to erlotinib. Clin Cancer Res 2011;17:2521-7.
101.	Sequist LV, Modiano M, Rixe O, Jackman DM, Andreas K et al. Targeting EGFR and ERBB3 in lung cancer patient: Clinical outcomes in a phase 1 trial of MM-121 in combination with erlotinib. J Clin Oncol 30, 2012;30:suppl; abstr 7556.
102.	Janjigian YY, Groen HJ, Horn L, Smit EF, Fu Y, Wang F, et al. Activity and tolerability of afatinib (BIBW2992) and cetuximab in NSCLC patients with acquired resistance to erlotinib or gefitinib. J Clin Oncol 2011;29:(suppl; abstr 7525).
103.	Iwahara T, Fujimoto J, Wen D, Cupples R, Bucay N, Arakawa T, et al. Molecular characterization of ALK, a receptor tyrosine kinase expressed specifically in the nervous system. Oncogene 1997;14:439-49.
104.	Morris SW, Kirstein MN, Valentine MB, Dittmer KG, Shapiro DN, Saltman DL, et al. Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin′s lymphoma. Science 1994;263:1281-4.
105.	Soda M, Choi YL, Enomoto M, Takada S, Yamashita Y, Ishikawa S, et al. Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer. Nature 2007;448:561-6.
106.	Shaw AT, Yeap BY, Mino-Kenudson M, Digumarthy SR, Costa DB, Heist RS, et al. Clinical features and outcome of patients with non-small-cell lung cancer who harbor EML4-ALK. J Clin Oncol 2009;27:4247-53.
107.	Shaw AT, Engelman JA. ALK in lung cancer: Past, present, and future. J Clin Oncol 2013;31:1105-11.
108.	Camidge DR, Bang YJ, Kwak EL, Iafrate AJ, Varella-Garcia M, Fox SB, et al. Activity and safety of crizotinib in patients with ALK-positive non-small-cell lung cancer: Updated results from a phase 1 study. Lancet Oncol 2012;13:1011-9.
109.	Shaw AT, Kim DW, Nakagawa K, Seto T, Crino L, Ahn MJ, et al. Crizotinib versus chemotherapy in advanced ALK-positive lung cancer. N Engl J Med 2013;368:2385-94.
110.	Mino-Kenudson M, Chirieac LR, Law K, Hornick JL, Lindeman N, Mark EJ, et al. A novel, highly sensitive antibody allows for the routine detection of ALK-rearranged lung adenocarcinomas by standard immunohistochemistry. Clin Cancer Res 2010;16:1561-71.
111.	Yi ES, Boland JM, Maleszewski JJ, Roden AC, Oliveira AM, Aubry MC, et al. Correlation of IHC and FISH for ALK gene rearrangement in non-small cell lung carcinoma: IHC score algorithm for FISH. J Thorac Oncol 2011;6:459-65.
112.	Choi YL, Soda M, Yamashita Y, Ueno T, Takashima J, Nakajima T, et al. EML4-ALK mutations in lung cancer that confer resistance to ALK inhibitors. N Engl J Med 2010;363:1734-9.
113.	Doebele RC, Pilling AB, Aisner DL, Kutateladze TG, Le AT, Weickhardt AJ, et al. Mechanisms of resistance to crizotinib in patients with ALK gene rearranged non-small cell lung cancer. Clin Cancer Res 2012;18:1472-82.
114.	Katayama R, Shaw AT, Khan TM, Mino-Kenudson M, Solomon BJ, Halmos B, et al. Mechanisms of acquired crizotinib resistance in ALK-rearranged lung Cancers. Sci Transl Med 2012;4:120ra17.
115.	Kim S, Kim TM, Kim DW, Go H, Keam B, Lee SH, et al. Heterogeneity of genetic changes associated with acquired crizotinib resistance in ALK-rearranged lung cancer. J Thorac Oncol 2013;8:415-22.
116.	Sasaki T, Koivunen J, Ogino A, Yanagita M, Nikiforow S, Zheng W, et al. A novel ALK secondary mutation and EGFR signaling cause resistance to ALK kinase inhibitors. Cancer Res 2011;71:6051-60.
117.	Sun HY, Ji FQ. A molecular dynamics investigation on the crizotinib resistance mechanism of C1156Y mutation in ALK. Biochem Biophys Res Commun 2012;423:319-24.
118.	Jokinen E, Laurila N, Koivunen JP. Alternative dosing of dual PI3K and MEK inhibition in cancer therapy. BMC Cancer 2012;12:612.
119.	Katayama R, Khan TM, Benes C, Lifshits E, Ebi H, Rivera VM, et al. Therapeutic strategies to overcome crizotinib resistance in non-small cell lung cancers harboring the fusion oncogene EML4-ALK. Proc Natl Acad Sci U S A 2011;108:7535-40.
120.	Sang J, Acquaviva J, Friedland JC, Smith DL, Sequeira M, Zhang C, et al. Targeted inhibition of the molecular chaperone Hsp90 overcomes ALK inhibitor resistance in non-small cell lung cancer. Cancer Discov 2013;3:430-43.
121.	Sequist LV, Gettinger S, Senzer NN, Martins RG, Jänne PA, Lilenbaum R, et al. Activity of IPI-504, a novel heat-shock protein 90 inhibitor, in patients with molecularly defined non-small-cell lung cancer. J Clin Oncol 2010;28:4953-60.
122.	Squillace R, Anjum R, Miller D, Vodala S, Moran L, Wang F, et al. AP26113 possesses pan-inhibitory activity versus crizotinib-resistant ALK mutants and oncogenic ROS1 fusions. Cancer Res 2013;73:(suppl; abstr 5655).
123.	Mehra R, Camidge DR, Sharma S, Felip E, Tan DS, Vansteenkiste JF, et al. First-in-human phase I trial of ALK inhibitor LDK378 in advanced solid tumors. J Clin Oncol 2012;30:(suppl; abstr 3007).
124.	Bernards A, de la Monte SM. The ltk receptor tyrosine kinase is expressed in pre-B lymphocytes and cerebral neurons and uses a non-AUG translational initiator. EMBO J 1990;9:2279-87.
125.	Roll JD, Reuther GW. ALK-activating homologous mutations in LTK induce cellular transformation. PLoS One 2012;7:e31733.
126.	Govindan R, Ding L, Griffith M, Subramanian J, Dees ND, Kanchi KL, et al. Genomic landscape of non-small cell lung cancer in smokers and never-smokers. Cell 2012;150:1121-34.
127.	Pasquale EB. Eph receptors and ephrins in cancer: Bidirectional signalling and beyond. Nat Rev Cancer 2010;10:165-80.
128.	Truitt L, Freywald A. Dancing with the dead: Eph receptors and their kinase-null partners. Biochem Cell Biol 2011;89:115-29.
129.	Lisabeth EM, Fernandez C, Pasquale EB. Cancer somatic mutations disrupt functions of the EphA3 receptor tyrosine kinase through multiple mechanisms. Biochemistry 2012;51:1464-75.
130.	Carles-Kinch K, Kilpatrick KE, Stewart JC, Kinch MS. Antibody targeting of the EphA2 tyrosine kinase inhibits malignant cell behavior. Cancer Res 2002;62:2840-7.
131.	Zhuang G, Song W, Amato K, Hwang Y, Lee K, Boothby M, et al. Effects of cancer-associated EPHA3 mutations on lung cancer. J Natl Cancer Inst 2012;104:1182-97.
132.	Werner H, Le Roith D. New concepts in regulation and function of the insulin-like growth factors: Implications for understanding normal growth and neoplasia. Cell Mol Life Sci 2000;57:932-42.
133.	Pollak M. Insulin and insulin-like growth factor signalling in neoplasia. Nat Rev Cancer 2008;8:915-28.
134.	Jassem J, Langer CJ, Karp DD, Mok T, Benner RJ, Green SJ, et al. Randomized, open label, phase III trial of figitumumab in combinations with paclitaxel and carboplatin versus paclitaxel and carboplatin in patients with non-small cell lung cancer (NSCLC). J Clin Oncol 2010;28: (suppl; abstr 7500).
135.	Karp DD, Paz-Ares LG, Novello S, Haluska P, Garland L, Cardenal F, et al. Phase II study of the anti-insulin-like growth factor type 1 receptor antibody CP-751,871 in combination with paclitaxel and carboplatin in previously untreated, locally advanced, or metastatic non-small-cell lung cancer. J Clin Oncol 2009;27:2516-22.
136.	Weickhardt A, Doebele R, Oton A, Lettieri J, Maxson D, Reynolds M, et al. A phase I/II study of erlotinib in combination with the anti-insulin-like growth factor-1 receptor monoclonal antibody IMC-A12 (cixutumumab) in patients with advanced non-small cell lung cancer. J Thorac Oncol 2012;7:419-26.
137.	Yee D. Insulin-like growth factor receptor inhibitors: Baby or the bathwater? J Natl Cancer Inst 2012;104:975-81.
138.	Shin DH, Min HY, El-Naggar AK, Lippman SM, Glisson B, Lee HY. Akt/mTOR counteract the antitumor activities of cixutumumab, an anti-insulin-like growth factor I receptor monoclonal antibody. Mol Cancer Ther 2011;10:2437-48.
139.	Macaulay VM, Middleton MR, Eckhardt SG, Juergens RA, Stephens AW, Poondru S, et al. Phase I study of OSI-906, dual tyrosine kinase inhibitor of insulin-like growth factor-1 receptor (IGF-1R) and insulin receptor (IR) in combination with erlotinib (E) in patients with advanced solid tumors. J Clin Oncol 2010;28:)(suppl; abstract 3016).
140.	Weiss J, Sos ML, Seidel D, Peifer M, Zander T, Heuckmann JM, et al. Frequent and focal FGFR1 amplification associates with therapeutically tractable FGFR1 dependency in squamous cell lung cancer. Sci Transl Med 2010;2:62ra93.
141.	Mason I. Initiation to end point: The multiple roles of fibroblast growth factors in neural development. Nat Rev Neurosci 2007;8:583-96.
142.	Houvras Y. Completing the Arc: Targeted inhibition of RET in medullary thyroid cancer. J Clin Oncol 2012;30:200-2.
143.	Chell V, Balmanno K, Little AS, Wilson M, Andrews S, Blockley L, et al. Tumour cell responses to new fibroblast growth factor receptor tyrosine kinase inhibitors and identification of a gatekeeper mutation in FGFR3 as a mechanism of acquired resistance. Oncogene 2013;32:3059-70.
144.	Dutt A, Ramos AH, Hammerman PS, Mermel C, Cho J, Sharifnia T, et al. Inhibitor-sensitive FGFR1 amplification in human non-small cell lung cancer. PLoS One 2011;6:e20351.
145.	Harbinski F, Craig VJ, Sanghavi S, Jeffery D, Liu L, Sheppard KA, et al. Rescue screens with secreted proteins reveal compensatory potential of receptor tyrosine kinases in driving cancer growth. Cancer Discov 2012;2:948-59.
146.	Li JL, Sainson RC, Oon CE, Turley H, Leek R, Sheldon H, et al. DLL4-Notch signaling mediates tumor resistance to anti-VEGF therapy in vivo. Cancer Res 2011;71:6073-83.
147.	Metzner T, Bedeir A, Held G, Peter-Vörösmarty B, Ghassemi S, Heinzle C, et al. Fibroblast growth factor receptors as therapeutic targets in human melanoma: Synergism with BRAF inhibition. J Invest Dermatol 2011;131:2087-95.
148.	Thomson S, Petti F, Sujka-Kwok I, Epstein D, Haley JD. Kinase switching in mesenchymal-like non-small cell lung cancer lines contributes to EGFR inhibitor resistance through pathway redundancy. Clin Exp Metastasis 2008;25:843-54.
149.	Ware KE, Hinz TK, Kleczko E, Singleton KR, Marek LA, Helfrich BA, et al. A mechanism of resistance to gefitinib mediated by cellular reprogramming and the acquisition of an FGF2-FGFR1 autocrine growth loop. Oncogenesis 2013;2:e39.
150.	Catalogue of somatic mutations in cancer. Available from: http://wwwsangeracuk/genetics/CGP/cosmic/. [Last accessed on 2013 May 12].
151.	Novello S, Scagliotti GV, Rosell R, Socinski MA, Brahmer J, Atkins J, et al. Phase II study of continuous daily sunitinib dosing in patients with previously treated advanced non-small cell lung cancer. Br J Cancer 2009;101:1543-8.
152.	Socinski MA, Novello S, Brahmer JR, Rosell R, Sanchez JM, Belani CP, et al. Multicenter, phase II trial of sunitinib in previously treated, advanced non-small-cell lung cancer. J Clin Oncol 2008;26:650-6.
153.	Khosravi-Far R, Der CJ. The Ras signal transduction pathway. Cancer Metastasis Rev 1994;13:67-89.
154.	Brose MS, Volpe P, Feldman M, Kumar M, Rishi I, Gerrero R, et al. BRAF and RAS mutations in human lung cancer and melanoma. Cancer Res 2002;62:6997-7000.
155.	Roberts PJ, Stinchcombe TE. KRAS mutation: Should we test for it, and does it matter? J Clin Oncol 2013;31:1112-21.
156.	Paik PK, Arcila ME, Fara M, Sima CS, Miller VA, Kris MG, et al. Clinical characteristics of patients with lung adenocarcinomas harboring BRAF mutations. J Clin Oncol 2011;29:2046-51.
157.	Sen B, Peng S, Tang X, Erickson HS, Galindo H, Mazumdar T, et al. Kinase-impaired BRAF mutations in lung cancer confer sensitivity to dasatinib. Sci Transl Med 2012;4:136ra70.
158.	Heidorn SJ, Milagre C, Whittaker S, Nourry A, Niculescu-Duvas I, Dhomen N, et al. Kinase-dead BRAF and oncogenic RAS cooperate to drive tumor progression through CRAF. Cell 2010;140:209-21.
159.	Marks JL, Gong Y, Chitale D, Golas B, McLellan MD, Kasai Y, et al. Novel MEK1 mutation identified by mutational analysis of epidermal growth factor receptor signaling pathway genes in lung adenocarcinoma. Cancer Res 2008;68:5524-8.
160.	Sos ML, Michel K, Zander T, Weiss J, Frommolt P, Peifer M, et al. Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions. J Clin Invest 2009;119:1727-40.
161.	Ji H, Wang Z, Perera SA, Li D, Liang MC, Zaghlul S, et al. Mutations in BRAF and KRAS converge on activation of the mitogen-activated protein kinase pathway in lung cancer mouse models. Cancer Res 2007;67:4933-9.
162.	Pratilas CA, Hanrahan AJ, Halilovic E, Persaud Y, Soh J, Chitale D, et al. Genetic predictors of MEK dependence in non-small cell lung cancer. Cancer Res 2008;68:9375-83.
163.	Trejo CL, Juan J, Vicent S, Sweet-Cordero A, McMahon M. MEK1/2 inhibition elicits regression of autochthonous lung tumors induced by KRASG12D or BRAFV600E. Cancer Res 2012;72:3048-59.
164.	Zhou C, Licciulli S, Avila JL, Cho M, Troutman S, Jiang P, et al. The Rac1 splice form Rac1b promotes K-ras-induced lung tumorigenesis. Oncogene 2013;32:903-9.
165.	Liu J, Lee W, Jiang Z, Chen Z, Jhunjhunwala S, Haverty PM, et al. Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events. Genome Res 2012;22:2315-27.
166.	Hatzivassiliou G, Liu B, O′Brien C, Spoerke JM, Hoeflich KP, Haverty PM, et al. ERK inhibition overcomes acquired resistance to MEK inhibitors. Mol Cancer Ther 2012;11:1143-54.
167.	Wang H, Daouti S, Li WH, Wen Y, Rizzo C, Higgins B, et al. Identification of the MEK1(F129L) activating mutation as a potential mechanism of acquired resistance to MEK inhibition in human cancers carrying the B-RafV600E mutation. Cancer Res 2011;71:5535-45.
168.	Corcoran RB, Dias-Santagata D, Bergethon K, Iafrate AJ, Settleman J, Engelman JA. BRAF gene amplification can promote acquired resistance to MEK inhibitors in cancer cells harboring the BRAF V600E mutation. Sci Signal 2010;3:ra84.
169.	Little AS, Balmanno K, Sale MJ, Newman S, Dry JR, Hampson M, et al. Amplification of the driving oncogene, KRAS or BRAF, underpins acquired resistance to MEK1/2 inhibitors in colorectal cancer cells. Sci Signal 2011;4:ra17.
170.	Yoon YK, Kim HP, Han SW, Oh do Y, Im SA, Bang YJ, et al. KRAS mutant lung cancer cells are differentially responsive to MEK inhibitor due to AKT or STAT3 activation: Implication for combinatorial approach. Mol Carcinog 2010;49:353-62.
171.	Corcoran RB, Cheng KA, Hata AN, Faber AC, Ebi H, Coffee EM, et al. Synthetic lethal interaction of combined BCL-XL and MEK inhibition promotes tumor regressions in KRAS mutant cancer models. Cancer Cell 2013;23:121-8.
172.	Chen Z, Cheng K, Walton Z, Wang Y, Ebi H, Shimamura T, et al. A murine lung cancer co-clinical trial identifies genetic modifiers of therapeutic response. Nature 2012;483:613-7.
173.	Carretero J, Shimamura T, Rikova K, Jackson AL, Wilkerson MD, Borgman CL, et al. Integrative genomic and proteomic analyses identify targets for Lkb1-deficient metastatic lung tumors. Cancer Cell 2010;17:547-59.
174.	Lauchle JO, Kim D, Le DT, Akagi K, Crone M, Krisman K, et al. Response and resistance to MEK inhibition in leukaemias initiated by hyperactive Ras. Nature 2009;461:411-4.
175.	Chang T, Krisman K, Theobald EH, Xu J, Akutagawa J, Lauchle JO, et al. Sustained MEK inhibition abrogates myeloproliferative disease in Nf1 mutant mice. J Clin Invest 2013;123:335-9.
176.	See WL, Tan IL, Mukherjee J, Nicolaides T, Pieper RO. Sensitivity of glioblastomas to clinically available MEK inhibitors is defined by neurofibromin 1 deficiency. Cancer Res 2012;72:3350-9.
177.	Abel EV, Basile KJ, Kugel CH 3 rd , Witkiewicz AK, Le K, Amaravadi RK, et al. Melanoma adapts to RAF/MEK inhibitors through FOXD3-mediated upregulation of ERBB3. J Clin Invest 2013;123:2155-68.
178.	Jänne PA, Shaw AT, Pereira JR, Jeannin G, Vansteenkiste J, Barrios C, et al. Selumetinib plus docetaxel for KRAS-mutant advanced non-small-cell lung cancer: A randomised, multicentre, placebo-controlled, phase 2 study. Lancet Oncol 2013;14:38-47.
179.	Seipelt I, Blumenstein LB, Baasner S, Mueller G, Aicher B, Teifel M, et al. A highly selective Erk-inhibitor with antiproliferative efficacy and the potential for combination therapy with modulators of the PI3K pathway. Cancer Res 2010;70:8 (suppl 1; abstract 3856).
180.	Seipelt I, Gerlach M, Baasner S, Blumenstein L, Mueller G, Aicher B, et al. Dual inhibitors for PI3K and Erk induce growth inhibition of tumor cells. Cancer Res 2013;70: (suppl; abstr 4474).
181.	Falchook GS, Long GV, Kurzrock R, Kim KB, Arkenau TH, Brown MP, et al. Dabrafenib in patients with melanoma, untreated brain metastases, and other solid tumours: A phase 1 dose-escalation trial. Lancet 2012;379:1893-901.
182.	Gautschi O, Pauli C, Strobel K, Hirschmann A, Printzen G, Aebi S, et al. A patient with BRAF V600E lung adenocarcinoma responding to vemurafenib. J Thorac Oncol 2012;7:e23-4.
183.	Rudin CM, Hong K, Streit M. Molecular characterization of acquired resistance to the BRAF inhibitor dabrafenib in a patient with BRAF-mutant non-small-cell lung cancer. J Thorac Oncol 2013;8:e41-2.
184.	Hatzivassiliou G, Song K, Yen I, Brandhuber BJ, Anderson DJ, Alvarado R, et al. RAF inhibitors prime wild-type RAF to activate the MAPK pathway and enhance growth. Nature 2010;464:431-5.
185.	Poulikakos PI, Zhang C, Bollag G, Shokat KM, Rosen N. RAF inhibitors transactivate RAF dimers and ERK signalling in cells with wild-type BRAF. Nature 2010;464:427-30.
186.	Ma Y, Zhang C, Habets G, Burton EA, Wong B, Nguyen H, et al. BRAF inhibitors upregulate EGFR ligands: a molecular link to RAF inhibitor-induced cutaneous squamous cell carcinomas. Mol Cancer Ther 2011;10:(suppl; abstr A229).
187.	Johannessen CM, Boehm JS, Kim SY, Thomas SR, Wardwell L, Johnson LA, et al. COT drives resistance to RAF inhibition through MAP kinase pathway reactivation. Nature 2010;468:968-72.
188.	Montagut C, Sharma SV, Shioda T, McDermott U, Ulman M, Ulkus LE, et al. Elevated CRAF as a potential mechanism of acquired resistance to BRAF inhibition in melanoma. Cancer Res 2008;68:4853-61.
189.	Nazarian R, Shi H, Wang Q, Kong X, Koya RC, Lee H, et al. Melanomas acquire resistance to B-RAF (V600E) inhibition by RTK or N-RAS upregulation. Nature 2010;468:973-7.
190.	Wagle N, Emery C, Berger MF, Davis MJ, Sawyer A, Pochanard P, et al. Dissecting therapeutic resistance to RAF inhibition in melanoma by tumor genomic profiling. J Clin Oncol 2011;29:3085-96.
191.	Yadav V, Zhang X, Liu J, Estrem S, Li S, Gong XQ, et al. Reactivation of mitogen-activated protein kinase (MAPK) pathway by FGF receptor 3 (FGFR3)/Ras mediates resistance to vemurafenib in human B-RAF V600E mutant melanoma. J Biol Chem 2012;287:28087-98.
192.	Shi H, Moriceau G, Kong X, Lee MK, Lee H, Koya RC, et al. Melanoma whole-exome sequencing identifies (V600E) B-RAF amplification-mediated acquired B-RAF inhibitor resistance. Nat Commun 2012;3:724.
193.	Falchook GS, Trent JC, Heinrich MC, Beadling C, Patterson J, Bastida CC, et al. BRAF mutant gastrointestinal stromal tumor: First report of regression with BRAF inhibitor dabrafenib (GSK2118436) and whole exomic sequencing for analysis of acquired resistance. Oncotarget 2013;4:310-5.
194.	Cipriani NA, Abidoye OO, Vokes E, Salgia R. MET as a target for treatment of chest tumors. Lung Cancer 2009;63:169-79.
195.	Tivantinib Study Halted Following Interim Analysis. Available from: http://www.onclive.com/web-exclusives/Tivantinib-Study-Halted-Following-Interim-Analysis. [Published on 2012 Oct 3, Last accessed on 2013 May 12].
196.	Spigel DR, Ervin TJ, Ramlau R, Daniel DB, Goldschmidt JH, Blumenschein GR, et al. Final efficacy results from OAM4558g, a randomized phase II study evaluating MetMAb or placebo in combination with erlotinib in advanced NSCLC. J Clin Oncol 2011:29:(suppl; abstr 7505).
197.	Ou SH, Kwak EL, Siwak-Tapp C, Dy J, Bergethon K, Clark JW, et al. Activity of crizotinib (PF02341066), a dual mesenchymal-epithelial transition (MET) and anaplastic lymphoma kinase (ALK) inhibitor, in a non-small cell lung cancer patient with de novo MET amplification. J Thorac Oncol 2011;6:942-6.
198.	Janne PA, Shaw AT, Giaccone G, Camidge R, Shreeve SM, Goldberg Z, et al. Phase I trial of irreversible pan-ERBB inhibitor dacomitinib (DAC) in combination with ALK/MET inhibitor crizotinib (CRIZ) in previously treated advanced non-small cell lung cancer (NSCLC). Presented at: European Society of Medical Oncology 2012 Congress; September 28-October 2, 2012; Vienna, Austria, Abstract 2787.
199.	Nokihara H, Yamamoto N, Nakamichi S, Wakui H, Yamada Y, Frye J, et al. Molecular profile and anti-tumor activity in non-small cell lung cancer (NSCLC) patients (pts) in a phase 1 study of cabozantinib (XL184) in Japan. Presented at: European Society of Medical Oncology 2012 Congress; September 28-October 2, 2012; Vienna, Austria, Abstract 3524.
200.	Cepero V, Sierra JR, Corso S, Ghiso E, Casorzo L, Perera T, et al. MET and KRAS gene amplification mediates acquired resistance to MET tyrosine kinase inhibitors. Cancer Res 2010;70:7580-90.
201.	Pal SK, Figlin RA, Reckamp KL. The role of targeting mammalian target of rapamycin in lung cancer. Clin Lung Cancer 2008;9:340-5.
202.	Burnett PE, Barrow RK, Cohen NA, Snyder SH, Sabatini DM. RAFT1 phosphorylation of the translational regulators p70 S6 kinase and 4E-BP1. Proc Natl Acad Sci U S A 1998;95:1432-7.
203.	Carnero A, Blanco-Aparicio C, Renner O, Link W, Leal JF. The PTEN/PI3K/AKT signalling pathway in cancer, therapeutic implications. Curr Cancer Drug Targets 2008;8:187-98.
204.	Tang JM, He QY, Guo RX, Chang XJ. Phosphorylated Akt overexpression and loss of PTEN expression in non-small cell lung cancer confers poor prognosis. Lung Cancer 2006;51:181-91.
205.	Janku F, Tsimberidou AM, Garrido-Laguna I, Wang X, Luthra R, Hong DS, et al. PIK3CA mutations in patients with advanced cancers treated with PI3K/AKT/mTOR axis inhibitors. Mol Cancer Ther 2011;10:558-65.
206.	Chaft JE, Arcila ME, Paik PK, Lau C, Riely GJ, Pietanza MC, et al. Coexistence of PIK3CA and other oncogene mutations in lung adenocarcinoma-rationale for comprehensive mutation profiling. Mol Cancer Ther 2012;11:485-91.
207.	Rekhtman N, Paik PK, Arcila ME, Tafe LJ, Oxnard GR, Moreira AL, et al. Clarifying the spectrum of driver oncogene mutations in biomarker-verified squamous carcinoma of lung: Lack of EGFR/KRAS and presence of PIK3CA/AKT1 mutations. Clin Cancer Res 2012;18:1167-76.
208.	Ihle NT, Lemos R Jr, Wipf P, Yacoub A, Mitchell C, Siwak D, et al. Mutations in the phosphatidylinositol-3-kinase pathway predict for antitumor activity of the inhibitor PX-866 whereas oncogenic Ras is a dominant predictor for resistance. Cancer Res 2009;69:143-50.
209.	Janku F, Wheler JJ, Westin SN, Moulder SL, Naing A, Tsimberidou AM, et al. PI3K/AKT/mTOR inhibitors in patients with breast and gynecologic malignancies harboring PIK3CA mutations. J Clin Oncol 2012;30:777-82.
210.	Malanga D, Scrima M, De Marco C, Fabiani F, De Rosa N, De Gisi S, et al. Activating E17K mutation in the gene encoding the protein kinase AKT1 in a subset of squamous cell carcinoma of the lung. Cell Cycle 2008;7:665-9.
211.	Carpten JD, Faber AL, Horn C, Donoho GP, Briggs SL, Robbins CM, et al. A transforming mutation in the pleckstrin homology domain of AKT1 in cancer. Nature 2007;448:439-44.
212.	Bleeker FE, Felicioni L, Buttitta F, Lamba S, Cardone L, Rodolfo M, et al. AKT1(E17K) in human solid tumours. Oncogene 2008;27:5648-50.
213.	Zunder ER, Knight ZA, Houseman BT, Apsel B, Shokat KM. Discovery of drug-resistant and drug-sensitizing mutations in the oncogenic PI3K isoform p110 alpha. Cancer Cell 2008;14:180-92.
214.	Isoyama S, Dan S, Nishimura Y, Nakamura N, Kajiwara G, Seki M, et al. Establishment of phosphatidylinositol 3-kinase inhibitor-resistant cancer cell lines and therapeutic strategies for overcoming the resistance. Cancer Sci 2012;103:1955-60.
215.	Okuzumi T, Fiedler D, Zhang C, Gray DC, Aizenstein B, Hoffman R, et al. Inhibitor hijacking of Akt activation. Nat Chem Biol 2009;5:484-93.
216.	Vilar E, Perez-Garcia J, Tabernero J. Pushing the envelope in the mTOR pathway: The second generation of inhibitors. Mol Cancer Ther 2011;10:395-403.
217.	Shimizu T, Tolcher AW, Papadopoulos KP, Beeram M, Rasco DW, Smith LS, et al. The clinical effect of the dual-targeting strategy involving PI3K/AKT/mTOR and RAS/MEK/ERK pathways in patients with advanced cancer. Clin Cancer Res 2012;18:2316-25.
218.	LoRusso P, Shapiro G, Pandya SS, Kwak EL, Jones C, Belvin M, et al. A first-in-human phase Ib study to evaluated the MEK inhibitor GDC-0973, combined with the pan-PI3K inhibitor GDC-0941, in patients with advanced solid tumors. J Clin Oncol 2012;30 (suppl; abstr 2566).
219.	Bedard P, Tabernero J, Kurzrock R, Britten CD, Stathis A, Perez-Garcia JM, et al. A phase lb, open-label, multicenter, dose-escalation study of the oral pan-PI3K inhibitor BKM120 in combination with the oral MEK1/2 inhibitor GSK1120212 in patients (pts) with selected advanced solid tumors. J Clin Oncol 2012;30:(suppl; abstr 3003).
220.	Hoeflich KP, Merchant M, Orr C, Chan J, Den Otter D, Berry L, et al. Intermittent administration of MEK inhibitor GDC-0973 plus PI3K inhibitor GDC-0941 triggers robust apoptosis and tumor growth inhibition. Cancer Res 2012;72:210-9.
221.	Reungwetwattana T, Molina JR, Mandrekar SJ, Allen-Ziegler K, Rowland KM, Reuter NF, et al. Brief report: A phase II “window-of-opportunity” frontline study of the MTOR inhibitor, temsirolimus given as a single agent in patients with advanced NSCLC, an NCCTG study. J Thorac Oncol 2012;7:919-22.
222.	Soria JC, Shepherd FA, Douillard JY, Wolf J, Giaccone G, Crino L, et al. Efficacy of everolimus (RAD001) in patients with advanced NSCLC previously treated with chemotherapy alone or with chemotherapy and EGFR inhibitors. Ann Oncol 2009;20:1674-81.
223.	Price KA, Azzoli CG, Krug LM, Pietanza MC, Rizvi NA, Pao W, et al. Phase II trial of gefitinib and everolimus in advanced non-small cell lung cancer. J Thorac Oncol 2010;5:1623-9.
224.	Bryce AH, Rao R, Sarkaria J, Reid JM, Qi Y, Qin R, et al. Phase I study of temsirolimus in combination with EKB-569 in patients with advanced solid tumors. Invest New Drugs 2012;30:1934-41.
225.	Cohen RB, Janne PA, Engelman JA, Martinez P, Nishida Y, Gendreau S, et al. A phase I safety and pharmocokinetic (PK) study of PI3K/TORC1/TORC2 inhibitor XL765 (SAR245409) in combination with erlotinib (E) in patients (pts) with advanced solid tumors. J Clin Oncol 2010;28:(suppl; abstr 3015).
226.	Uehara Y. Natural product origins of Hsp90 inhibitors. Curr Cancer Drug Targets 2003;3:325-30.
227.	Neckers L, Workman P. Hsp90 molecular chaperone inhibitors: Are we there yet? Clin Cancer Res 2012;18:64-76.
228.	Koga F, Xu W, Karpova TS, McNally JG, Baron R, Neckers L. Hsp90 inhibition transiently activates Src kinase and promotes Src-dependent Akt and Erk activation. Proc Natl Acad Sci U S A 2006;103:11318-22.
229.	Socinski MA, Goldman J, El-Hariry I, Koczywas M, Vukovic V, Horn L, et al. A multicenter phase II study of ganetespib monotherapy in patients with genotypically defined advanced non-small cell lung cancer. Clin Cancer Res 2013;19:3068-77.
230.	Rikova K, Guo A, Zeng Q, Possemato A, Yu J, Haack H, et al. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 2007;131:1190-203.
231.	Yoshida A, Kohno T, Tsuta K, Wakai S, Arai Y, Shimada Y, et al. ROS1-rearranged lung cancer: A clinicopathologic and molecular study of 15 surgical cases. Am J Surg Pathol 2013;37:554-62.
232.	Nagarajan L, Louie E, Tsujimoto Y, Balduzzi PC, Huebner K, Croce CM. The human c-ros gene (ROS) is located at chromosome region 6q16 – 6q22. Proc Natl Acad Sci U S A 1986;83:6568-72.
233.	Ou SH, Tan J, Yen Y, Soo RA. ROS1 as a ′druggable′ receptor tyrosine kinase: Lessons learned from inhibiting the ALK pathway. Expert Rev Anticancer Ther 2012;12:447-56.
234.	Shaw AT, Camidge DR, Engelman JA, Solomon BJ, Kwak EL, Clark JW, et al. Clinical activity of crizotinib in advanced non-small cell lung cancer (NSCLC) harboring ROS1 gene rearrangement. J Clin Oncol 2012;30:(suppl; abstr 7508).
235.	McDermott U, Iafrate AJ, Gray NS, Shioda T, Classon M, Maheswaran S, et al. Genomic alterations of anaplastic lymphoma kinase may sensitize tumors to anaplastic lymphoma kinase inhibitors. Cancer Res 2008;68:3389-95.
236.	Acquaviva J, Wong R, Charest A. The multifaceted roles of the receptor tyrosine kinase ROS in development and cancer. Biochim Biophys Acta 2009;1795:37-52.
237.	Davies KD, Le AT, Theodoro MF, Skokan MC, Aisner DL, Berge EM, et al. Identifying and targeting ROS1 gene fusions in non-small cell lung cancer. Clin Cancer Res 2012;18:4570-9.
238.	Takeuchi K, Soda M, Togashi Y, Suzuki R, Sakata S, Hatano S, et al. RET, ROS1 and ALK fusions in lung cancer. Nat Med 2012;18:378-81.
239.	Wang R, Hu H, Pan Y, Li Y, Ye T, Li C, et al. RET fusions define a unique molecular and clinicopathologic subtype of non-small-cell lung cancer. J Clin Oncol 2012;30:4352-9.
240.	Wells SA Jr, Robinson BG, Gagel RF, Dralle H, Fagin JA, Santoro M, et al. Vandetanib in patients with locally advanced or metastatic medullary thyroid cancer: A randomized, double-blind phase III trial. J Clin Oncol 2012;30:134-41.
241.	Lee JS, Hirsh V, Park K, Qin S, Blajman CR, Perng RP, et al. Vandetanib versus placebo in patients with advanced non-small-cell lung cancer after prior therapy with an epidermal growth factor receptor tyrosine kinase inhibitor: A randomized, double-blind phase III trial (ZEPHYR). J Clin Oncol 2012;30:1114-21.
242.	Paz-Ares L, Hirsh V, Zhang L, Marinis FD, Yang JC, Wakelee H, et al. Monotherapy administration of sorafenib in patients with non-small cell lung cancer: Phase III, randomized, double-blind, placebo-controlled MISSION trial. Presented on September 29, 2012 in Vienna, Austria during the 37 th ESMO Congress, Abstract LBA33.
243.	Drilon A, Wang L, Hasanovic A, Suehara Y, Lipson D, Stephens P, et al. Response to cabozantinib in patients with RET fusion-positive lung adenocarcinomas. Cancer Discov 2013;3:630-5.
244.	Gautschi O, Zander T, Keller FA, Strobel K, Hirschmann A, Aebi S, et al. A patient with lung adenocarcinoma and RET fusion treated with vandetanib. J Thorac Oncol 2013;8:e43-4.
245.	Davis MI, Hunt JP, Herrgard S, Ciceri P, Wodicka LM, Pallares G, et al. Comprehensive analysis of kinase inhibitor selectivity. Nat Biotechnol 2011;29:1046-51.
246.	De Falco V, Buonocore P, Muthu M, Torregrossa L, Basolo F, Billaud M, et al. Ponatinib (AP24534) is a novel potent inhibitor of oncogenic RET mutants associated with thyroid cancer. J Clin Endocrinol Metab 2013;98:E811-9.
247.	Shuai K, Liu B. Regulation of JAK-STAT signalling in the immune system. Nat Rev Immunol 2003;3:900-11.
248.	van der Geer P, Hunter T, Lindberg RA. Receptor protein-tyrosine kinases and their signal transduction pathways. Annu Rev Cell Biol 1994;10:251-337.
249.	Nakao M, Yokota S, Iwai T, Kaneko H, Horiike S, Kashima K, et al. Internal tandem duplication of the flt3 gene found in acute myeloid leukemia. Leukemia 1996;10:1911-8.
250.	Beimfohr C, Klugbauer S, Demidchik EP, Lengfelder E, Rabes HM. NTRK1 re-arrangement in papillary thyroid carcinomas of children after the chernobyl reactor accident. Int J Cancer 1999;80:842-7.
251.	Martin-Zanca D, Hughes SH, Barbacid M. A human oncogene formed by the fusion of truncated tropomyosin and protein tyrosine kinase sequences. Nature 1986;319:743-8.
252.	Harada T, Yatabe Y, Takeshita M, Koga T, Yano T, Wang Y, et al. Role and relevance of TrkB mutations and expression in non-small cell lung cancer. Clin Cancer Res 2011;17:2638-45.
253.	Pardoll DM. The blockade of immune checkpoints in cancer immunotherapy. Nat Rev Cancer 2012;12:252-64.
254.	Dong H, Zhu G, Tamada K, Chen L. B7-H1, a third member of the B7 family, co-stimulates T-cell proliferation and interleukin-10 secretion. Nat Med 1999;5:1365-9.
255.	Freeman GJ, Long AJ, Iwai Y, Bourque K, Chernova T, Nishimura H, et al. Engagement of the PD-1 immunoinhibitory receptor by a novel B7 family member leads to negative regulation of lymphocyte activation. J Exp Med 2000;192:1027-34.
256.	Topalian SL, Drake CG, Pardoll DM. Targeting the PD-1/B7-H1(PD-L1) pathway to activate anti-tumor immunity. Curr Opin Immunol 2012;24:207-12.
257.	Dong H, Strome SE, Salomao DR, Tamura H, Hirano F, Flies DB, et al. Tumor-associated B7-H1 promotes T-cell apoptosis: A potential mechanism of immune evasion. Nat Med 2002;8:793-800.
258.	Iwai Y, Ishida M, Tanaka Y, Okazaki T, Honjo T, Minato N. Involvement of PD-L1 on tumor cells in the escape from host immune system and tumor immunotherapy by PD-L1 blockade. Proc Natl Acad Sci U S A 2002;99:12293-7.
259.	Zhang Y, Huang S, Gong D, Qin Y, Shen Q. Programmed death-1 upregulation is correlated with dysfunction of tumor-infiltrating CD8+T lymphocytes in human non-small cell lung cancer. Cell Mol Immunol 2010;7:389-95.
260.	Lynch TJ, Bondarenko I, Luft A, Serwatowski P, Barlesi F, Chacko R, et al. Ipilimumab in combination with paclitaxel and carboplatin as first-line treatment in stage IIIB/IV non-small-cell lung cancer: Results from a randomized, double-blind, multicenter phase II study. J Clin Oncol 2012;30:2046-54.
261.	Brahmer JR, Tykodi SS, Chow LQ, Hwu WJ, Topalian SL, Hwu P, et al. Safety and activity of anti-PD-L1 antibody in patients with advanced cancer. N Engl J Med 2012;366:2455-65.
262.	Topalian SL, Hodi FS, Brahmer JR, Gettinger SN, Smith DC, McDermott DF, et al. Safety, activity, and immune correlates of anti-PD-1 antibody in cancer. N Engl J Med 2012;366:2443-54.

Authors

Dr. Thanyanan Reungwetwattana: Department of Internal Medicine, Division of Medical Oncology, Ramathibodi Hospital, Mahidol University, Bangkok 10400, Thailand
Dr. Grace Kho Dy: Department of Medicine, Roswell Park Cancer Institute, Buffalo, NY 1426